Hb_001369_020

Information

Type -
Description -
Location Contig1369: 18967-25804
Sequence    

Annotation

kegg
ID pop:POPTR_0004s24130g
description hypothetical protein
nr
ID XP_012090488.1
description PREDICTED: U-box domain-containing protein 35-like [Jatropha curcas]
swissprot
ID Q9SW11
description U-box domain-containing protein 35 OS=Arabidopsis thaliana GN=PUB35 PE=1 SV=2
trembl
ID A0A067JI20
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26289 PE=3 SV=1
Gene Ontology
ID GO:0004674
description u-box domain-containing protein 35-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10120: 22830-25758 , PASA_asmbl_10121: 18985-26106
cDNA
(Sanger)
(ID:Location)		 052_D20.ab1: 23498-25758

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001369_020 0.0 - - PREDICTED: U-box domain-containing protein 35-like [Jatropha curcas]
2 Hb_073171_050 0.0857344592 transcription factor TF Family: MYB-related PREDICTED: myb-like protein H [Jatropha curcas]
3 Hb_007193_030 0.0943953065 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ706 isoform X1 [Jatropha curcas]
4 Hb_028285_020 0.1034334809 transcription factor TF Family: C2C2-CO-like zinc finger protein, putative [Ricinus communis]
5 Hb_005080_020 0.1075236293 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
6 Hb_001623_410 0.1160494797 - - PREDICTED: beta-amylase 1, chloroplastic [Jatropha curcas]
7 Hb_003905_040 0.120773943 - - PREDICTED: heptahelical transmembrane protein 2 [Jatropha curcas]
8 Hb_002999_130 0.1266650821 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0008s08740g [Populus trichocarpa]
9 Hb_002783_140 0.1326268725 - - PREDICTED: uncharacterized protein LOC105635332 [Jatropha curcas]
10 Hb_000318_410 0.1381092907 - - PREDICTED: extra-large guanine nucleotide-binding protein 1-like [Jatropha curcas]
11 Hb_004907_070 0.1415206375 - - PREDICTED: protein phosphatase 2C 37 [Jatropha curcas]
12 Hb_000086_620 0.1427592024 - - PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Jatropha curcas]
13 Hb_132840_020 0.1430721274 - - PREDICTED: protein LHY [Jatropha curcas]
14 Hb_000035_060 0.1450168175 - - PREDICTED: chaperone protein ClpB4, mitochondrial [Jatropha curcas]
15 Hb_001357_060 0.1452203419 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 18-like [Cicer arietinum]
16 Hb_004218_080 0.1464253585 - - PREDICTED: uncharacterized protein LOC105631207 [Jatropha curcas]
17 Hb_012799_040 0.1494199348 - - PREDICTED: transmembrane ascorbate ferrireductase 1 [Jatropha curcas]
18 Hb_004800_140 0.149534755 - - PREDICTED: uncharacterized protein LOC105633940 isoform X1 [Jatropha curcas]
19 Hb_011457_080 0.1509415191 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
20 Hb_019837_010 0.1515229328 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001369_020 Hb_001369_020 Hb_073171_050 Hb_073171_050 Hb_001369_020--Hb_073171_050 Hb_007193_030 Hb_007193_030 Hb_001369_020--Hb_007193_030 Hb_028285_020 Hb_028285_020 Hb_001369_020--Hb_028285_020 Hb_005080_020 Hb_005080_020 Hb_001369_020--Hb_005080_020 Hb_001623_410 Hb_001623_410 Hb_001369_020--Hb_001623_410 Hb_003905_040 Hb_003905_040 Hb_001369_020--Hb_003905_040 Hb_002999_130 Hb_002999_130 Hb_073171_050--Hb_002999_130 Hb_073171_050--Hb_007193_030 Hb_073171_050--Hb_028285_020 Hb_073171_050--Hb_001623_410 Hb_012799_040 Hb_012799_040 Hb_073171_050--Hb_012799_040 Hb_004218_080 Hb_004218_080 Hb_007193_030--Hb_004218_080 Hb_007193_030--Hb_001623_410 Hb_005725_280 Hb_005725_280 Hb_007193_030--Hb_005725_280 Hb_007193_030--Hb_003905_040 Hb_004108_120 Hb_004108_120 Hb_028285_020--Hb_004108_120 Hb_028285_020--Hb_007193_030 Hb_028285_020--Hb_002999_130 Hb_002783_140 Hb_002783_140 Hb_028285_020--Hb_002783_140 Hb_048476_040 Hb_048476_040 Hb_005080_020--Hb_048476_040 Hb_132840_020 Hb_132840_020 Hb_005080_020--Hb_132840_020 Hb_005080_020--Hb_001623_410 Hb_000009_150 Hb_000009_150 Hb_005080_020--Hb_000009_150 Hb_000329_790 Hb_000329_790 Hb_005080_020--Hb_000329_790 Hb_000086_620 Hb_000086_620 Hb_001623_410--Hb_000086_620 Hb_000985_140 Hb_000985_140 Hb_001623_410--Hb_000985_140 Hb_003078_070 Hb_003078_070 Hb_001623_410--Hb_003078_070 Hb_149484_010 Hb_149484_010 Hb_003905_040--Hb_149484_010 Hb_001357_060 Hb_001357_060 Hb_003905_040--Hb_001357_060 Hb_003905_040--Hb_002783_140 Hb_000402_030 Hb_000402_030 Hb_003905_040--Hb_000402_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.40096 39.3961 27.8385 11.6318 0.355376 0.62065
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.30295 1.63413 2.49513 5.90318 20.8058

CAGE analysis