Hb_002999_130

Information

Type transcription factor
Description TF Family: C2C2-Dof
Location Contig2999: 115746-118452
Sequence    

Annotation

kegg
ID pop:POPTR_0008s08740g
description hypothetical protein
nr
ID XP_006379668.1
description hypothetical protein POPTR_0008s08740g [Populus trichocarpa]
swissprot
ID Q93ZL5
description Cyclic dof factor 2 OS=Arabidopsis thaliana GN=CDF2 PE=1 SV=2
trembl
ID U5G227
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s08740g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002999_130 0.0 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0008s08740g [Populus trichocarpa]
2 Hb_073171_050 0.0918318666 transcription factor TF Family: MYB-related PREDICTED: myb-like protein H [Jatropha curcas]
3 Hb_000594_150 0.1085265283 - - PREDICTED: serine/threonine-protein kinase STN7, chloroplastic-like isoform X1 [Nelumbo nucifera]
4 Hb_000656_260 0.1180782596 - - PREDICTED: uncharacterized protein LOC105631376 [Jatropha curcas]
5 Hb_010180_050 0.1183887578 - - PREDICTED: CBL-interacting protein kinase 2 [Jatropha curcas]
6 Hb_004800_140 0.1229471424 - - PREDICTED: uncharacterized protein LOC105633940 isoform X1 [Jatropha curcas]
7 Hb_001369_020 0.1266650821 - - PREDICTED: U-box domain-containing protein 35-like [Jatropha curcas]
8 Hb_028285_020 0.1299481158 transcription factor TF Family: C2C2-CO-like zinc finger protein, putative [Ricinus communis]
9 Hb_019837_010 0.1352995702 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000110_040 0.13729081 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2 [Jatropha curcas]
11 Hb_012799_040 0.1379630506 - - PREDICTED: transmembrane ascorbate ferrireductase 1 [Jatropha curcas]
12 Hb_029584_110 0.1386885547 transcription factor TF Family: MYB-related PREDICTED: myb-like protein J [Jatropha curcas]
13 Hb_008202_010 0.1395476104 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
14 Hb_001771_060 0.141484189 - - hypothetical protein B456_012G144100 [Gossypium raimondii]
15 Hb_002596_090 0.1431651129 - - PREDICTED: calcium-transporting ATPase 4, plasma membrane-type-like isoform X1 [Jatropha curcas]
16 Hb_183025_010 0.144728014 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Jatropha curcas]
17 Hb_000340_380 0.1451421282 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 [Jatropha curcas]
18 Hb_004108_120 0.1455038299 - - PREDICTED: EID1-like F-box protein 3 [Jatropha curcas]
19 Hb_004907_070 0.1463552522 - - PREDICTED: protein phosphatase 2C 37 [Jatropha curcas]
20 Hb_007193_030 0.1484407238 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ706 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002999_130 Hb_002999_130 Hb_073171_050 Hb_073171_050 Hb_002999_130--Hb_073171_050 Hb_000594_150 Hb_000594_150 Hb_002999_130--Hb_000594_150 Hb_000656_260 Hb_000656_260 Hb_002999_130--Hb_000656_260 Hb_010180_050 Hb_010180_050 Hb_002999_130--Hb_010180_050 Hb_004800_140 Hb_004800_140 Hb_002999_130--Hb_004800_140 Hb_001369_020 Hb_001369_020 Hb_002999_130--Hb_001369_020 Hb_073171_050--Hb_001369_020 Hb_007193_030 Hb_007193_030 Hb_073171_050--Hb_007193_030 Hb_028285_020 Hb_028285_020 Hb_073171_050--Hb_028285_020 Hb_001623_410 Hb_001623_410 Hb_073171_050--Hb_001623_410 Hb_012799_040 Hb_012799_040 Hb_073171_050--Hb_012799_040 Hb_000072_240 Hb_000072_240 Hb_000594_150--Hb_000072_240 Hb_004976_080 Hb_004976_080 Hb_000594_150--Hb_004976_080 Hb_019837_010 Hb_019837_010 Hb_000594_150--Hb_019837_010 Hb_004907_070 Hb_004907_070 Hb_000594_150--Hb_004907_070 Hb_000594_150--Hb_010180_050 Hb_000656_260--Hb_012799_040 Hb_036492_020 Hb_036492_020 Hb_000656_260--Hb_036492_020 Hb_029584_110 Hb_029584_110 Hb_000656_260--Hb_029584_110 Hb_006358_030 Hb_006358_030 Hb_000656_260--Hb_006358_030 Hb_000402_180 Hb_000402_180 Hb_000656_260--Hb_000402_180 Hb_010180_050--Hb_000072_240 Hb_005054_320 Hb_005054_320 Hb_010180_050--Hb_005054_320 Hb_000230_250 Hb_000230_250 Hb_010180_050--Hb_000230_250 Hb_003106_240 Hb_003106_240 Hb_010180_050--Hb_003106_240 Hb_004241_170 Hb_004241_170 Hb_004800_140--Hb_004241_170 Hb_008341_010 Hb_008341_010 Hb_004800_140--Hb_008341_010 Hb_000340_380 Hb_000340_380 Hb_004800_140--Hb_000340_380 Hb_001631_110 Hb_001631_110 Hb_004800_140--Hb_001631_110 Hb_000732_160 Hb_000732_160 Hb_004800_140--Hb_000732_160 Hb_001369_020--Hb_007193_030 Hb_001369_020--Hb_028285_020 Hb_005080_020 Hb_005080_020 Hb_001369_020--Hb_005080_020 Hb_001369_020--Hb_001623_410 Hb_003905_040 Hb_003905_040 Hb_001369_020--Hb_003905_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0581335 10.3169 9.76729 3.57682 0.0519251 0.030227
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.176588 0.654999 0.150126 0.901123 8.32143

CAGE analysis