Hb_008341_010

Information

Type transcription factor
Description TF Family: Orphans
Location Contig8341: 16540-17675
Sequence    

Annotation

kegg
ID rcu:RCOM_0506950
description hypothetical protein
nr
ID XP_012092505.1
description PREDICTED: zinc finger protein HD1-like isoform X2 [Jatropha curcas]
swissprot
ID Q9LJB7
description B-box zinc finger protein 32 OS=Arabidopsis thaliana GN=BBX32 PE=1 SV=1
trembl
ID A0A067LJZ4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19761 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008341_010 0.0 transcription factor TF Family: Orphans PREDICTED: zinc finger protein HD1-like isoform X2 [Jatropha curcas]
2 Hb_004241_170 0.0628364549 - - PREDICTED: uncharacterized protein LOC105633220 [Jatropha curcas]
3 Hb_001631_110 0.0747593282 - - PREDICTED: LOW QUALITY PROTEIN: gamma-glutamyltranspeptidase 1-like [Populus euphratica]
4 Hb_010091_030 0.078406201 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
5 Hb_010175_050 0.1032307992 - - PREDICTED: uncharacterized protein LOC105639906 [Jatropha curcas]
6 Hb_004800_140 0.1240467758 - - PREDICTED: uncharacterized protein LOC105633940 isoform X1 [Jatropha curcas]
7 Hb_000732_160 0.1306147493 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
8 Hb_003811_030 0.1506729729 - - hypothetical protein JCGZ_01307 [Jatropha curcas]
9 Hb_019026_040 0.1509455529 - - S-locus lectin protein kinase family protein [Theobroma cacao]
10 Hb_000230_250 0.1617320521 - - PREDICTED: pyruvate, phosphate dikinase, chloroplastic [Jatropha curcas]
11 Hb_004880_120 0.1625944888 - - PREDICTED: calcium-binding protein PBP1 [Jatropha curcas]
12 Hb_036492_020 0.1632746577 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
13 Hb_029584_110 0.1652191782 transcription factor TF Family: MYB-related PREDICTED: myb-like protein J [Jatropha curcas]
14 Hb_000656_260 0.1676105529 - - PREDICTED: uncharacterized protein LOC105631376 [Jatropha curcas]
15 Hb_010614_010 0.168583271 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
16 Hb_008202_010 0.1688846521 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
17 Hb_005054_320 0.1715465627 - - PREDICTED: uncharacterized protein LOC105646518 [Jatropha curcas]
18 Hb_000402_180 0.1722948191 - - PREDICTED: uncharacterized protein LOC105644975 [Jatropha curcas]
19 Hb_005772_020 0.1745946066 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
20 Hb_017098_020 0.1753198279 - - Zinc finger protein GIS2 [Medicago truncatula]

Gene co-expression network

sample Hb_008341_010 Hb_008341_010 Hb_004241_170 Hb_004241_170 Hb_008341_010--Hb_004241_170 Hb_001631_110 Hb_001631_110 Hb_008341_010--Hb_001631_110 Hb_010091_030 Hb_010091_030 Hb_008341_010--Hb_010091_030 Hb_010175_050 Hb_010175_050 Hb_008341_010--Hb_010175_050 Hb_004800_140 Hb_004800_140 Hb_008341_010--Hb_004800_140 Hb_000732_160 Hb_000732_160 Hb_008341_010--Hb_000732_160 Hb_004241_170--Hb_001631_110 Hb_004241_170--Hb_010091_030 Hb_004241_170--Hb_004800_140 Hb_004241_170--Hb_000732_160 Hb_004241_170--Hb_010175_050 Hb_001631_110--Hb_000732_160 Hb_001631_110--Hb_010091_030 Hb_001631_110--Hb_004800_140 Hb_017098_020 Hb_017098_020 Hb_001631_110--Hb_017098_020 Hb_003811_030 Hb_003811_030 Hb_010091_030--Hb_003811_030 Hb_010091_030--Hb_010175_050 Hb_164146_020 Hb_164146_020 Hb_010091_030--Hb_164146_020 Hb_005772_020 Hb_005772_020 Hb_010175_050--Hb_005772_020 Hb_019026_040 Hb_019026_040 Hb_010175_050--Hb_019026_040 Hb_010175_050--Hb_003811_030 Hb_000230_250 Hb_000230_250 Hb_010175_050--Hb_000230_250 Hb_002999_130 Hb_002999_130 Hb_004800_140--Hb_002999_130 Hb_000340_380 Hb_000340_380 Hb_004800_140--Hb_000340_380 Hb_004800_140--Hb_000732_160 Hb_010614_010 Hb_010614_010 Hb_000732_160--Hb_010614_010 Hb_031685_010 Hb_031685_010 Hb_000732_160--Hb_031685_010 Hb_094439_010 Hb_094439_010 Hb_000732_160--Hb_094439_010 Hb_010904_010 Hb_010904_010 Hb_000732_160--Hb_010904_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0249101 7.03911 5.69404 0.574966 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.362406 4.01622

CAGE analysis