Hb_017098_020

Information

Type -
Description -
Location Contig17098: 12991-17813
Sequence    

Annotation

kegg
ID mtr:MTR_2g030270
description Zinc finger protein GIS2
nr
ID XP_003594532.1
description Zinc finger protein GIS2 [Medicago truncatula]
swissprot
ID -
description -
trembl
ID U5FUS7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s01952g PE=4 SV=1
Gene Ontology
ID GO:0003676
description zinc finger protein gis2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017098_020 0.0 - - Zinc finger protein GIS2 [Medicago truncatula]
2 Hb_012807_070 0.0634999864 - - PREDICTED: UDP-glycosyltransferase 86A2 [Jatropha curcas]
3 Hb_009780_010 0.0712867629 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003062_020 0.0737511986 - - Polyprotein, putative [Solanum demissum]
5 Hb_001631_110 0.1348048921 - - PREDICTED: LOW QUALITY PROTEIN: gamma-glutamyltranspeptidase 1-like [Populus euphratica]
6 Hb_011038_020 0.1389417836 - - conserved hypothetical protein [Ricinus communis]
7 Hb_090889_010 0.159346238 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
8 Hb_004880_120 0.174087584 - - PREDICTED: calcium-binding protein PBP1 [Jatropha curcas]
9 Hb_008341_010 0.1753198279 transcription factor TF Family: Orphans PREDICTED: zinc finger protein HD1-like isoform X2 [Jatropha curcas]
10 Hb_010614_010 0.188551805 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
11 Hb_010091_030 0.1922139035 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
12 Hb_004241_170 0.1933511655 - - PREDICTED: uncharacterized protein LOC105633220 [Jatropha curcas]
13 Hb_137701_020 0.1936961708 - - putative protein kinase [Oryza sativa Japonica Group]
14 Hb_101034_020 0.1958455503 - - hypothetical protein JCGZ_13470 [Jatropha curcas]
15 Hb_000732_160 0.198014161 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
16 Hb_002025_240 0.199239218 - - -
17 Hb_130579_050 0.2035475431 - - hypothetical protein JCGZ_25577 [Jatropha curcas]
18 Hb_000039_190 0.2101044959 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
19 Hb_010175_050 0.2102664388 - - PREDICTED: uncharacterized protein LOC105639906 [Jatropha curcas]
20 Hb_001040_090 0.2105280331 - - PREDICTED: tetraspanin-19-like [Jatropha curcas]

Gene co-expression network

sample Hb_017098_020 Hb_017098_020 Hb_012807_070 Hb_012807_070 Hb_017098_020--Hb_012807_070 Hb_009780_010 Hb_009780_010 Hb_017098_020--Hb_009780_010 Hb_003062_020 Hb_003062_020 Hb_017098_020--Hb_003062_020 Hb_001631_110 Hb_001631_110 Hb_017098_020--Hb_001631_110 Hb_011038_020 Hb_011038_020 Hb_017098_020--Hb_011038_020 Hb_090889_010 Hb_090889_010 Hb_017098_020--Hb_090889_010 Hb_012807_070--Hb_003062_020 Hb_012807_070--Hb_009780_010 Hb_012807_070--Hb_090889_010 Hb_130579_050 Hb_130579_050 Hb_012807_070--Hb_130579_050 Hb_004880_120 Hb_004880_120 Hb_012807_070--Hb_004880_120 Hb_009780_010--Hb_003062_020 Hb_009780_010--Hb_011038_020 Hb_009780_010--Hb_090889_010 Hb_101034_020 Hb_101034_020 Hb_009780_010--Hb_101034_020 Hb_003062_020--Hb_090889_010 Hb_003062_020--Hb_011038_020 Hb_000039_190 Hb_000039_190 Hb_003062_020--Hb_000039_190 Hb_008341_010 Hb_008341_010 Hb_001631_110--Hb_008341_010 Hb_004241_170 Hb_004241_170 Hb_001631_110--Hb_004241_170 Hb_000732_160 Hb_000732_160 Hb_001631_110--Hb_000732_160 Hb_010091_030 Hb_010091_030 Hb_001631_110--Hb_010091_030 Hb_004800_140 Hb_004800_140 Hb_001631_110--Hb_004800_140 Hb_011038_020--Hb_101034_020 Hb_168509_020 Hb_168509_020 Hb_011038_020--Hb_168509_020 Hb_013786_010 Hb_013786_010 Hb_011038_020--Hb_013786_010 Hb_089568_010 Hb_089568_010 Hb_090889_010--Hb_089568_010 Hb_006356_010 Hb_006356_010 Hb_090889_010--Hb_006356_010 Hb_090889_010--Hb_000039_190 Hb_001587_050 Hb_001587_050 Hb_090889_010--Hb_001587_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.500801 0.341144 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0838838 0.380218

CAGE analysis