Hb_000039_190

Information

Type transcription factor
Description TF Family: MYB
Location Contig39: 208730-211176
Sequence    

Annotation

kegg
ID tcc:TCM_030009
description MYB-like 102
nr
ID XP_012091477.1
description PREDICTED: transcription factor MYB3-like [Jatropha curcas]
swissprot
ID Q8GWP0
description Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1
trembl
ID A0A067JDN5
description MYB family protein OS=Jatropha curcas GN=JCGZ_21344 PE=4 SV=1
Gene Ontology
ID GO:0003677
description protein odorant1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000039_190 0.0 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
2 Hb_001040_090 0.1159354283 - - PREDICTED: tetraspanin-19-like [Jatropha curcas]
3 Hb_090889_010 0.1440030097 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
4 Hb_094439_010 0.1501205537 - - PREDICTED: MACPF domain-containing protein At1g14780 [Jatropha curcas]
5 Hb_003062_020 0.154017569 - - Polyprotein, putative [Solanum demissum]
6 Hb_003050_010 0.1574042276 - - PREDICTED: VQ motif-containing protein 1-like [Jatropha curcas]
7 Hb_000987_160 0.1591306604 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
8 Hb_003349_020 0.1643774584 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like [Beta vulgaris subsp. vulgaris]
9 Hb_006356_010 0.1650819645 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
10 Hb_002030_090 0.1665082243 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
11 Hb_004374_100 0.1668876413 - - PREDICTED: phosphoglycerate mutase-like protein AT74H [Jatropha curcas]
12 Hb_011038_020 0.1675891943 - - conserved hypothetical protein [Ricinus communis]
13 Hb_010614_010 0.167929017 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
14 Hb_171168_010 0.1712542326 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
15 Hb_031685_010 0.1741995046 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
16 Hb_008878_020 0.1758782531 - - PREDICTED: aldehyde dehydrogenase family 3 member H1-like [Populus euphratica]
17 Hb_000334_160 0.1791008612 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001172_150 0.1795329356 desease resistance Gene Name: ABC_membrane PREDICTED: putative ABC transporter C family member 15 [Jatropha curcas]
19 Hb_000732_160 0.1808219603 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
20 Hb_000042_310 0.1815143159 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]

Gene co-expression network

sample Hb_000039_190 Hb_000039_190 Hb_001040_090 Hb_001040_090 Hb_000039_190--Hb_001040_090 Hb_090889_010 Hb_090889_010 Hb_000039_190--Hb_090889_010 Hb_094439_010 Hb_094439_010 Hb_000039_190--Hb_094439_010 Hb_003062_020 Hb_003062_020 Hb_000039_190--Hb_003062_020 Hb_003050_010 Hb_003050_010 Hb_000039_190--Hb_003050_010 Hb_000987_160 Hb_000987_160 Hb_000039_190--Hb_000987_160 Hb_001953_110 Hb_001953_110 Hb_001040_090--Hb_001953_110 Hb_131719_010 Hb_131719_010 Hb_001040_090--Hb_131719_010 Hb_003349_020 Hb_003349_020 Hb_001040_090--Hb_003349_020 Hb_010904_010 Hb_010904_010 Hb_001040_090--Hb_010904_010 Hb_023904_010 Hb_023904_010 Hb_001040_090--Hb_023904_010 Hb_090889_010--Hb_003062_020 Hb_012807_070 Hb_012807_070 Hb_090889_010--Hb_012807_070 Hb_089568_010 Hb_089568_010 Hb_090889_010--Hb_089568_010 Hb_006356_010 Hb_006356_010 Hb_090889_010--Hb_006356_010 Hb_001587_050 Hb_001587_050 Hb_090889_010--Hb_001587_050 Hb_000732_160 Hb_000732_160 Hb_094439_010--Hb_000732_160 Hb_007113_020 Hb_007113_020 Hb_094439_010--Hb_007113_020 Hb_010614_010 Hb_010614_010 Hb_094439_010--Hb_010614_010 Hb_031685_010 Hb_031685_010 Hb_094439_010--Hb_031685_010 Hb_029095_010 Hb_029095_010 Hb_094439_010--Hb_029095_010 Hb_093364_010 Hb_093364_010 Hb_094439_010--Hb_093364_010 Hb_017098_020 Hb_017098_020 Hb_003062_020--Hb_017098_020 Hb_003062_020--Hb_012807_070 Hb_009780_010 Hb_009780_010 Hb_003062_020--Hb_009780_010 Hb_011038_020 Hb_011038_020 Hb_003062_020--Hb_011038_020 Hb_001285_020 Hb_001285_020 Hb_003050_010--Hb_001285_020 Hb_002025_290 Hb_002025_290 Hb_003050_010--Hb_002025_290 Hb_003050_010--Hb_000987_160 Hb_000334_160 Hb_000334_160 Hb_003050_010--Hb_000334_160 Hb_009102_010 Hb_009102_010 Hb_003050_010--Hb_009102_010 Hb_000987_160--Hb_006356_010 Hb_000987_160--Hb_000334_160 Hb_000987_160--Hb_001285_020 Hb_000987_160--Hb_089568_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.6808 5.47916 0.174542 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0379589 0 0 1.37422 5.08267

CAGE analysis