Hb_000334_160

Information

Type -
Description -
Location Contig334: 141572-141937
Sequence    

Annotation

kegg
ID rcu:RCOM_0967470
description hypothetical protein
nr
ID XP_002517807.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RVN8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0967470 PE=4 SV=1
Gene Ontology
ID GO:0006661
description rna rnp complex-1-interacting

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35034: 141739-142191
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000334_160 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000987_160 0.1342281488 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
3 Hb_003050_010 0.1346035875 - - PREDICTED: VQ motif-containing protein 1-like [Jatropha curcas]
4 Hb_000039_190 0.1791008612 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
5 Hb_004554_010 0.1853430671 - - PREDICTED: uncharacterized protein LOC105636233 isoform X1 [Jatropha curcas]
6 Hb_000300_070 0.1947613123 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
7 Hb_001285_020 0.1966229544 - - UDP-glucosyltransferase, putative [Ricinus communis]
8 Hb_000445_310 0.2024950859 - - hypothetical protein B456_011G218000 [Gossypium raimondii]
9 Hb_000252_240 0.2036398731 - - PREDICTED: protein TRANSPARENT TESTA 12-like isoform X2 [Gossypium raimondii]
10 Hb_002025_290 0.2039505753 transcription factor TF Family: G2-like conserved hypothetical protein [Ricinus communis]
11 Hb_001544_060 0.2085685875 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB4 isoform X2 [Jatropha curcas]
12 Hb_001898_100 0.2108002024 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 2-like [Jatropha curcas]
13 Hb_005831_010 0.2187439988 - - hypothetical protein JCGZ_04003 [Jatropha curcas]
14 Hb_006356_010 0.2212620294 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
15 Hb_003349_020 0.2303613849 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like [Beta vulgaris subsp. vulgaris]
16 Hb_000175_200 0.235418064 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000163_140 0.2357112933 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
18 Hb_011038_020 0.2359663733 - - conserved hypothetical protein [Ricinus communis]
19 Hb_007850_100 0.2368161156 - - PREDICTED: uncharacterized protein LOC105640661 [Jatropha curcas]
20 Hb_023904_010 0.2380333031 - - -

Gene co-expression network

sample Hb_000334_160 Hb_000334_160 Hb_000987_160 Hb_000987_160 Hb_000334_160--Hb_000987_160 Hb_003050_010 Hb_003050_010 Hb_000334_160--Hb_003050_010 Hb_000039_190 Hb_000039_190 Hb_000334_160--Hb_000039_190 Hb_004554_010 Hb_004554_010 Hb_000334_160--Hb_004554_010 Hb_000300_070 Hb_000300_070 Hb_000334_160--Hb_000300_070 Hb_001285_020 Hb_001285_020 Hb_000334_160--Hb_001285_020 Hb_006356_010 Hb_006356_010 Hb_000987_160--Hb_006356_010 Hb_000987_160--Hb_003050_010 Hb_000987_160--Hb_000039_190 Hb_000987_160--Hb_001285_020 Hb_089568_010 Hb_089568_010 Hb_000987_160--Hb_089568_010 Hb_003050_010--Hb_001285_020 Hb_002025_290 Hb_002025_290 Hb_003050_010--Hb_002025_290 Hb_009102_010 Hb_009102_010 Hb_003050_010--Hb_009102_010 Hb_003050_010--Hb_000039_190 Hb_001040_090 Hb_001040_090 Hb_000039_190--Hb_001040_090 Hb_090889_010 Hb_090889_010 Hb_000039_190--Hb_090889_010 Hb_094439_010 Hb_094439_010 Hb_000039_190--Hb_094439_010 Hb_003062_020 Hb_003062_020 Hb_000039_190--Hb_003062_020 Hb_000445_310 Hb_000445_310 Hb_004554_010--Hb_000445_310 Hb_000163_140 Hb_000163_140 Hb_004554_010--Hb_000163_140 Hb_152180_010 Hb_152180_010 Hb_004554_010--Hb_152180_010 Hb_004554_010--Hb_000300_070 Hb_014658_010 Hb_014658_010 Hb_004554_010--Hb_014658_010 Hb_031862_160 Hb_031862_160 Hb_004554_010--Hb_031862_160 Hb_000252_240 Hb_000252_240 Hb_000300_070--Hb_000252_240 Hb_000300_070--Hb_000445_310 Hb_000300_070--Hb_000163_140 Hb_001544_060 Hb_001544_060 Hb_000300_070--Hb_001544_060 Hb_124677_010 Hb_124677_010 Hb_000300_070--Hb_124677_010 Hb_000300_070--Hb_002025_290 Hb_001285_020--Hb_002025_290 Hb_001285_020--Hb_009102_010 Hb_005575_010 Hb_005575_010 Hb_001285_020--Hb_005575_010 Hb_003453_060 Hb_003453_060 Hb_001285_020--Hb_003453_060 Hb_000500_360 Hb_000500_360 Hb_001285_020--Hb_000500_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.72092 8.6034 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.186887 0 2.12554 4.76808

CAGE analysis