Hb_094439_010

Information

Type -
Description -
Location Contig94439: 7282-11770
Sequence    

Annotation

kegg
ID pop:POPTR_0008s13580g
description POPTRDRAFT_766201; hypothetical protein
nr
ID XP_012072333.1
description PREDICTED: MACPF domain-containing protein At1g14780 [Jatropha curcas]
swissprot
ID Q8L612
description MACPF domain-containing protein At1g14780 OS=Arabidopsis thaliana GN=At1g14780 PE=2 SV=1
trembl
ID A0A067KT43
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04781 PE=4 SV=1
Gene Ontology
ID GO:0015824
description macpf domain-containing protein at1g14780

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63240: 7932-10142
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_094439_010 0.0 - - PREDICTED: MACPF domain-containing protein At1g14780 [Jatropha curcas]
2 Hb_000732_160 0.097704039 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
3 Hb_007113_020 0.1060477705 - - -
4 Hb_010614_010 0.1080999431 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
5 Hb_031685_010 0.1100653255 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
6 Hb_029095_010 0.1141671424 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_21060 [Jatropha curcas]
7 Hb_093364_010 0.1165840624 - - PREDICTED: uncharacterized protein LOC105636199 [Jatropha curcas]
8 Hb_002030_090 0.1208256343 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
9 Hb_010904_010 0.125704305 - - PREDICTED: probable receptor-like protein kinase At5g39030 isoform X2 [Jatropha curcas]
10 Hb_171168_010 0.1273396281 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
11 Hb_001501_020 0.1285136842 - - PREDICTED: receptor-like protein kinase [Jatropha curcas]
12 Hb_003849_030 0.1315875204 - - hypothetical protein AALP_AA5G029900 [Arabis alpina]
13 Hb_000261_370 0.1318595721 - - -
14 Hb_000020_020 0.132862571 - - hypothetical protein JCGZ_06491 [Jatropha curcas]
15 Hb_005016_080 0.133238536 - - PREDICTED: neurofilament heavy polypeptide-like [Jatropha curcas]
16 Hb_001918_030 0.1342905176 - - -
17 Hb_000417_250 0.1367130939 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 65 [Jatropha curcas]
18 Hb_002849_120 0.1386776326 - - ferric reductase oxidase [Manihot esculenta]
19 Hb_003387_080 0.1443202844 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
20 Hb_168509_020 0.148409955 - - macrophage migration inhibitory factor family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_094439_010 Hb_094439_010 Hb_000732_160 Hb_000732_160 Hb_094439_010--Hb_000732_160 Hb_007113_020 Hb_007113_020 Hb_094439_010--Hb_007113_020 Hb_010614_010 Hb_010614_010 Hb_094439_010--Hb_010614_010 Hb_031685_010 Hb_031685_010 Hb_094439_010--Hb_031685_010 Hb_029095_010 Hb_029095_010 Hb_094439_010--Hb_029095_010 Hb_093364_010 Hb_093364_010 Hb_094439_010--Hb_093364_010 Hb_000732_160--Hb_010614_010 Hb_000732_160--Hb_031685_010 Hb_010904_010 Hb_010904_010 Hb_000732_160--Hb_010904_010 Hb_001631_110 Hb_001631_110 Hb_000732_160--Hb_001631_110 Hb_004241_170 Hb_004241_170 Hb_000732_160--Hb_004241_170 Hb_000261_370 Hb_000261_370 Hb_007113_020--Hb_000261_370 Hb_001501_020 Hb_001501_020 Hb_007113_020--Hb_001501_020 Hb_006827_030 Hb_006827_030 Hb_007113_020--Hb_006827_030 Hb_003849_030 Hb_003849_030 Hb_007113_020--Hb_003849_030 Hb_171168_010 Hb_171168_010 Hb_007113_020--Hb_171168_010 Hb_127661_010 Hb_127661_010 Hb_007113_020--Hb_127661_010 Hb_010614_010--Hb_010904_010 Hb_010614_010--Hb_004241_170 Hb_010614_010--Hb_001631_110 Hb_004767_020 Hb_004767_020 Hb_010614_010--Hb_004767_020 Hb_006789_030 Hb_006789_030 Hb_031685_010--Hb_006789_030 Hb_031685_010--Hb_029095_010 Hb_005888_050 Hb_005888_050 Hb_031685_010--Hb_005888_050 Hb_003337_020 Hb_003337_020 Hb_031685_010--Hb_003337_020 Hb_029095_010--Hb_093364_010 Hb_005486_020 Hb_005486_020 Hb_029095_010--Hb_005486_020 Hb_000990_040 Hb_000990_040 Hb_029095_010--Hb_000990_040 Hb_002596_090 Hb_002596_090 Hb_029095_010--Hb_002596_090 Hb_004611_050 Hb_004611_050 Hb_029095_010--Hb_004611_050 Hb_093364_010--Hb_000990_040 Hb_093364_010--Hb_004611_050 Hb_000020_020 Hb_000020_020 Hb_093364_010--Hb_000020_020 Hb_093364_010--Hb_005486_020 Hb_000185_170 Hb_000185_170 Hb_093364_010--Hb_000185_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 4.42083 6.41388 1.08798 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.018243 0 2.22143 4.77723

CAGE analysis