Hb_000732_160

Information

Type transcription factor
Description TF Family: MYB
Location Contig732: 170524-171868
Sequence    

Annotation

kegg
ID pop:POPTR_0004s03310g
description POPTRDRAFT_555481; putative MYB transcription factor family protein
nr
ID XP_012091477.1
description PREDICTED: transcription factor MYB3-like [Jatropha curcas]
swissprot
ID Q8GWP0
description Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1
trembl
ID A0A067JDN5
description MYB family protein OS=Jatropha curcas GN=JCGZ_21344 PE=4 SV=1
Gene Ontology
ID GO:0003677
description protein odorant1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56125: 170391-172015
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000732_160 0.0 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
2 Hb_010614_010 0.0931118822 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
3 Hb_031685_010 0.0970292687 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
4 Hb_094439_010 0.097704039 - - PREDICTED: MACPF domain-containing protein At1g14780 [Jatropha curcas]
5 Hb_010904_010 0.1026805473 - - PREDICTED: probable receptor-like protein kinase At5g39030 isoform X2 [Jatropha curcas]
6 Hb_001631_110 0.1030086872 - - PREDICTED: LOW QUALITY PROTEIN: gamma-glutamyltranspeptidase 1-like [Populus euphratica]
7 Hb_004241_170 0.1064835243 - - PREDICTED: uncharacterized protein LOC105633220 [Jatropha curcas]
8 Hb_029584_110 0.1252864868 transcription factor TF Family: MYB-related PREDICTED: myb-like protein J [Jatropha curcas]
9 Hb_029095_010 0.1266957422 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_21060 [Jatropha curcas]
10 Hb_003029_010 0.1284417031 transcription factor TF Family: WRKY conserved hypothetical protein [Ricinus communis]
11 Hb_004800_140 0.1287413691 - - PREDICTED: uncharacterized protein LOC105633940 isoform X1 [Jatropha curcas]
12 Hb_002596_090 0.1295877068 - - PREDICTED: calcium-transporting ATPase 4, plasma membrane-type-like isoform X1 [Jatropha curcas]
13 Hb_000340_380 0.1296934776 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 [Jatropha curcas]
14 Hb_008202_010 0.1297640356 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
15 Hb_008341_010 0.1306147493 transcription factor TF Family: Orphans PREDICTED: zinc finger protein HD1-like isoform X2 [Jatropha curcas]
16 Hb_183025_010 0.1346185488 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Jatropha curcas]
17 Hb_003970_010 0.1462295968 - - PREDICTED: sigma factor binding protein 1, chloroplastic-like [Populus euphratica]
18 Hb_140000_010 0.147476033 - - receptor-kinase, putative [Ricinus communis]
19 Hb_093364_010 0.1489281491 - - PREDICTED: uncharacterized protein LOC105636199 [Jatropha curcas]
20 Hb_003387_080 0.1557490166 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000732_160 Hb_000732_160 Hb_010614_010 Hb_010614_010 Hb_000732_160--Hb_010614_010 Hb_031685_010 Hb_031685_010 Hb_000732_160--Hb_031685_010 Hb_094439_010 Hb_094439_010 Hb_000732_160--Hb_094439_010 Hb_010904_010 Hb_010904_010 Hb_000732_160--Hb_010904_010 Hb_001631_110 Hb_001631_110 Hb_000732_160--Hb_001631_110 Hb_004241_170 Hb_004241_170 Hb_000732_160--Hb_004241_170 Hb_010614_010--Hb_094439_010 Hb_010614_010--Hb_010904_010 Hb_010614_010--Hb_004241_170 Hb_010614_010--Hb_001631_110 Hb_004767_020 Hb_004767_020 Hb_010614_010--Hb_004767_020 Hb_006789_030 Hb_006789_030 Hb_031685_010--Hb_006789_030 Hb_029095_010 Hb_029095_010 Hb_031685_010--Hb_029095_010 Hb_005888_050 Hb_005888_050 Hb_031685_010--Hb_005888_050 Hb_003337_020 Hb_003337_020 Hb_031685_010--Hb_003337_020 Hb_031685_010--Hb_094439_010 Hb_007113_020 Hb_007113_020 Hb_094439_010--Hb_007113_020 Hb_094439_010--Hb_029095_010 Hb_093364_010 Hb_093364_010 Hb_094439_010--Hb_093364_010 Hb_003970_010 Hb_003970_010 Hb_010904_010--Hb_003970_010 Hb_002211_020 Hb_002211_020 Hb_010904_010--Hb_002211_020 Hb_171168_010 Hb_171168_010 Hb_010904_010--Hb_171168_010 Hb_008202_010 Hb_008202_010 Hb_010904_010--Hb_008202_010 Hb_000110_040 Hb_000110_040 Hb_010904_010--Hb_000110_040 Hb_008341_010 Hb_008341_010 Hb_001631_110--Hb_008341_010 Hb_001631_110--Hb_004241_170 Hb_010091_030 Hb_010091_030 Hb_001631_110--Hb_010091_030 Hb_004800_140 Hb_004800_140 Hb_001631_110--Hb_004800_140 Hb_017098_020 Hb_017098_020 Hb_001631_110--Hb_017098_020 Hb_004241_170--Hb_008341_010 Hb_004241_170--Hb_010091_030 Hb_004241_170--Hb_004800_140 Hb_010175_050 Hb_010175_050 Hb_004241_170--Hb_010175_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 7.41691 8.81365 1.39024 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.58403 5.78379

CAGE analysis