Hb_002211_020

Information

Type transcription factor
Description TF Family: C2C2-GATA
Location Contig2211: 17783-18892
Sequence    

Annotation

kegg
ID rcu:RCOM_1450040
description GATA transcription factor, putative
nr
ID XP_012067181.1
description PREDICTED: GATA transcription factor 5-like [Jatropha curcas]
swissprot
ID Q9FH57
description GATA transcription factor 5 OS=Arabidopsis thaliana GN=GATA5 PE=2 SV=1
trembl
ID A0A067L003
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26740 PE=4 SV=1
Gene Ontology
ID GO:0005634
description gata transcription factor 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22817: 18320-18815
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002211_020 0.0 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 5-like [Jatropha curcas]
2 Hb_003970_010 0.0613373432 - - PREDICTED: sigma factor binding protein 1, chloroplastic-like [Populus euphratica]
3 Hb_010904_010 0.0844129863 - - PREDICTED: probable receptor-like protein kinase At5g39030 isoform X2 [Jatropha curcas]
4 Hb_011028_030 0.0984179922 - - conserved hypothetical protein [Ricinus communis]
5 Hb_019863_050 0.1034753153 - - PREDICTED: uncharacterized protein LOC103343426 [Prunus mume]
6 Hb_000031_320 0.1038394097 - - unnamed protein product [Vitis vinifera]
7 Hb_000110_040 0.1137776476 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2 [Jatropha curcas]
8 Hb_046739_010 0.1175489549 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
9 Hb_000032_590 0.1255148012 - - PREDICTED: glutaredoxin domain-containing cysteine-rich protein 1 [Jatropha curcas]
10 Hb_000049_290 0.1259010539 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
11 Hb_000186_180 0.1261864774 - - PREDICTED: uncharacterized protein LOC105649287 [Jatropha curcas]
12 Hb_000072_240 0.1273963457 transcription factor TF Family: C2C2-CO-like zinc finger protein, putative [Ricinus communis]
13 Hb_000780_160 0.1282554789 - - hypothetical protein RCOM_0483300 [Ricinus communis]
14 Hb_002155_020 0.1285283747 - - PREDICTED: probable WRKY transcription factor 65 [Jatropha curcas]
15 Hb_010180_050 0.1345411869 - - PREDICTED: CBL-interacting protein kinase 2 [Jatropha curcas]
16 Hb_006243_010 0.1348581042 - - PREDICTED: cell wall protein IFF6 [Populus euphratica]
17 Hb_000331_220 0.1386086864 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000167_100 0.1392494115 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_003643_080 0.1395286244 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
20 Hb_002818_160 0.1395598788 - - PREDICTED: uncharacterized protein LOC105642722 [Jatropha curcas]

Gene co-expression network

sample Hb_002211_020 Hb_002211_020 Hb_003970_010 Hb_003970_010 Hb_002211_020--Hb_003970_010 Hb_010904_010 Hb_010904_010 Hb_002211_020--Hb_010904_010 Hb_011028_030 Hb_011028_030 Hb_002211_020--Hb_011028_030 Hb_019863_050 Hb_019863_050 Hb_002211_020--Hb_019863_050 Hb_000031_320 Hb_000031_320 Hb_002211_020--Hb_000031_320 Hb_000110_040 Hb_000110_040 Hb_002211_020--Hb_000110_040 Hb_003970_010--Hb_010904_010 Hb_003970_010--Hb_000031_320 Hb_008202_010 Hb_008202_010 Hb_003970_010--Hb_008202_010 Hb_003970_010--Hb_000110_040 Hb_046739_010 Hb_046739_010 Hb_003970_010--Hb_046739_010 Hb_000732_160 Hb_000732_160 Hb_010904_010--Hb_000732_160 Hb_171168_010 Hb_171168_010 Hb_010904_010--Hb_171168_010 Hb_010904_010--Hb_008202_010 Hb_010904_010--Hb_000110_040 Hb_002155_020 Hb_002155_020 Hb_011028_030--Hb_002155_020 Hb_011028_030--Hb_046739_010 Hb_000373_010 Hb_000373_010 Hb_011028_030--Hb_000373_010 Hb_002407_090 Hb_002407_090 Hb_011028_030--Hb_002407_090 Hb_011028_030--Hb_000031_320 Hb_000644_010 Hb_000644_010 Hb_011028_030--Hb_000644_010 Hb_019863_050--Hb_011028_030 Hb_033363_030 Hb_033363_030 Hb_019863_050--Hb_033363_030 Hb_000072_240 Hb_000072_240 Hb_019863_050--Hb_000072_240 Hb_019863_050--Hb_046739_010 Hb_019863_050--Hb_000031_320 Hb_000031_320--Hb_046739_010 Hb_001677_170 Hb_001677_170 Hb_000031_320--Hb_001677_170 Hb_000031_320--Hb_002407_090 Hb_002818_160 Hb_002818_160 Hb_000031_320--Hb_002818_160 Hb_000110_040--Hb_008202_010 Hb_000656_260 Hb_000656_260 Hb_000110_040--Hb_000656_260 Hb_000340_380 Hb_000340_380 Hb_000110_040--Hb_000340_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.55802 1.47518 0.609661 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.149175 2.18663

CAGE analysis