Hb_002818_160

Information

Type -
Description -
Location Contig2818: 172787-174154
Sequence    

Annotation

kegg
ID pop:POPTR_0014s10660g
description POPTRDRAFT_572511; hypothetical protein
nr
ID XP_012083030.1
description PREDICTED: uncharacterized protein LOC105642722 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K968
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14130 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29503: 172773-174457
cDNA
(Sanger)
(ID:Location)		 052_J03.ab1: 172773-173486

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002818_160 0.0 - - PREDICTED: uncharacterized protein LOC105642722 [Jatropha curcas]
2 Hb_002307_120 0.0635848428 - - scab resistance family protein [Populus trichocarpa]
3 Hb_003767_060 0.0802359642 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
4 Hb_000031_320 0.0858911291 - - unnamed protein product [Vitis vinifera]
5 Hb_000186_180 0.0946235613 - - PREDICTED: uncharacterized protein LOC105649287 [Jatropha curcas]
6 Hb_003209_150 0.0956955125 - - CLE9, putative [Ricinus communis]
7 Hb_003654_020 0.0996228497 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
8 Hb_002010_030 0.10122812 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
9 Hb_001777_030 0.1029685326 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
10 Hb_046739_010 0.105836517 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
11 Hb_003970_010 0.1100181538 - - PREDICTED: sigma factor binding protein 1, chloroplastic-like [Populus euphratica]
12 Hb_001953_110 0.1159089407 - - PREDICTED: protein TAPETUM DETERMINANT 1-like [Jatropha curcas]
13 Hb_001369_340 0.1160311837 - - Peroxisomal membrane protein 11B [Theobroma cacao]
14 Hb_005337_140 0.1164195757 - - PREDICTED: LOW QUALITY PROTEIN: wall-associated receptor kinase 1-like [Jatropha curcas]
15 Hb_001677_170 0.1180540346 - - hypothetical protein M569_03661, partial [Genlisea aurea]
16 Hb_004017_030 0.1189060343 - - PREDICTED: 2-hydroxyisoflavanone dehydratase-like [Jatropha curcas]
17 Hb_000343_050 0.1215547543 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005227_030 0.1267271248 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP28, chloroplastic [Jatropha curcas]
19 Hb_000732_300 0.1305776774 - - PREDICTED: uncharacterized protein LOC105649465 isoform X2 [Jatropha curcas]
20 Hb_006106_010 0.1324066029 transcription factor TF Family: TCP transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_002818_160 Hb_002818_160 Hb_002307_120 Hb_002307_120 Hb_002818_160--Hb_002307_120 Hb_003767_060 Hb_003767_060 Hb_002818_160--Hb_003767_060 Hb_000031_320 Hb_000031_320 Hb_002818_160--Hb_000031_320 Hb_000186_180 Hb_000186_180 Hb_002818_160--Hb_000186_180 Hb_003209_150 Hb_003209_150 Hb_002818_160--Hb_003209_150 Hb_003654_020 Hb_003654_020 Hb_002818_160--Hb_003654_020 Hb_002307_120--Hb_003209_150 Hb_005337_140 Hb_005337_140 Hb_002307_120--Hb_005337_140 Hb_002307_120--Hb_003767_060 Hb_002307_120--Hb_003654_020 Hb_002307_120--Hb_000186_180 Hb_001369_340 Hb_001369_340 Hb_003767_060--Hb_001369_340 Hb_002010_030 Hb_002010_030 Hb_003767_060--Hb_002010_030 Hb_004017_030 Hb_004017_030 Hb_003767_060--Hb_004017_030 Hb_003767_060--Hb_003209_150 Hb_007462_020 Hb_007462_020 Hb_003767_060--Hb_007462_020 Hb_046739_010 Hb_046739_010 Hb_000031_320--Hb_046739_010 Hb_001677_170 Hb_001677_170 Hb_000031_320--Hb_001677_170 Hb_011028_030 Hb_011028_030 Hb_000031_320--Hb_011028_030 Hb_002407_090 Hb_002407_090 Hb_000031_320--Hb_002407_090 Hb_003970_010 Hb_003970_010 Hb_000031_320--Hb_003970_010 Hb_000186_180--Hb_003654_020 Hb_000186_180--Hb_000031_320 Hb_000167_100 Hb_000167_100 Hb_000186_180--Hb_000167_100 Hb_000186_180--Hb_001677_170 Hb_003209_150--Hb_001369_340 Hb_004117_380 Hb_004117_380 Hb_003209_150--Hb_004117_380 Hb_003209_150--Hb_003654_020 Hb_003209_150--Hb_004017_030 Hb_000732_300 Hb_000732_300 Hb_003654_020--Hb_000732_300 Hb_003654_020--Hb_000031_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0229701 13.502 24.5777 6.86273 0.0172557 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.126243 0 0.122957 0.185745 27.6275

CAGE analysis