Hb_002307_120

Information

Type -
Description -
Location Contig2307: 83640-86380
Sequence    

Annotation

kegg
ID pop:POPTR_0010s11720g
description scab resistance family protein
nr
ID XP_002315907.2
description scab resistance family protein [Populus trichocarpa]
swissprot
ID O82318
description Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 OS=Arabidopsis thaliana GN=At2g25790 PE=2 SV=1
trembl
ID B9HWB2
description Scab resistance family protein OS=Populus trichocarpa GN=POPTR_0010s11720g PE=4 SV=2
Gene Ontology
ID GO:0005515
description probable lrr receptor-like serine threonine-protein kinase at4g36180

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002307_120 0.0 - - scab resistance family protein [Populus trichocarpa]
2 Hb_002818_160 0.0635848428 - - PREDICTED: uncharacterized protein LOC105642722 [Jatropha curcas]
3 Hb_003209_150 0.0782516186 - - CLE9, putative [Ricinus communis]
4 Hb_005337_140 0.0903462501 - - PREDICTED: LOW QUALITY PROTEIN: wall-associated receptor kinase 1-like [Jatropha curcas]
5 Hb_003767_060 0.0909080734 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
6 Hb_003654_020 0.09919621 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
7 Hb_000186_180 0.1077741442 - - PREDICTED: uncharacterized protein LOC105649287 [Jatropha curcas]
8 Hb_002010_030 0.1090013319 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
9 Hb_000031_320 0.111355493 - - unnamed protein product [Vitis vinifera]
10 Hb_001369_340 0.1116867319 - - Peroxisomal membrane protein 11B [Theobroma cacao]
11 Hb_000834_170 0.1138520557 - - polygalacturonase, putative [Ricinus communis]
12 Hb_046739_010 0.1146604376 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
13 Hb_001953_110 0.120625931 - - PREDICTED: protein TAPETUM DETERMINANT 1-like [Jatropha curcas]
14 Hb_001777_030 0.1226569289 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
15 Hb_005227_030 0.130976917 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP28, chloroplastic [Jatropha curcas]
16 Hb_004109_140 0.1313110307 - - conserved hypothetical protein [Ricinus communis]
17 Hb_006106_010 0.1317968162 transcription factor TF Family: TCP transcription factor, putative [Ricinus communis]
18 Hb_003970_010 0.131993523 - - PREDICTED: sigma factor binding protein 1, chloroplastic-like [Populus euphratica]
19 Hb_000732_300 0.1357533649 - - PREDICTED: uncharacterized protein LOC105649465 isoform X2 [Jatropha curcas]
20 Hb_004017_030 0.1361425006 - - PREDICTED: 2-hydroxyisoflavanone dehydratase-like [Jatropha curcas]

Gene co-expression network

sample Hb_002307_120 Hb_002307_120 Hb_002818_160 Hb_002818_160 Hb_002307_120--Hb_002818_160 Hb_003209_150 Hb_003209_150 Hb_002307_120--Hb_003209_150 Hb_005337_140 Hb_005337_140 Hb_002307_120--Hb_005337_140 Hb_003767_060 Hb_003767_060 Hb_002307_120--Hb_003767_060 Hb_003654_020 Hb_003654_020 Hb_002307_120--Hb_003654_020 Hb_000186_180 Hb_000186_180 Hb_002307_120--Hb_000186_180 Hb_002818_160--Hb_003767_060 Hb_000031_320 Hb_000031_320 Hb_002818_160--Hb_000031_320 Hb_002818_160--Hb_000186_180 Hb_002818_160--Hb_003209_150 Hb_002818_160--Hb_003654_020 Hb_001369_340 Hb_001369_340 Hb_003209_150--Hb_001369_340 Hb_003209_150--Hb_003767_060 Hb_004117_380 Hb_004117_380 Hb_003209_150--Hb_004117_380 Hb_003209_150--Hb_003654_020 Hb_004017_030 Hb_004017_030 Hb_003209_150--Hb_004017_030 Hb_031069_040 Hb_031069_040 Hb_005337_140--Hb_031069_040 Hb_005337_140--Hb_003209_150 Hb_033363_030 Hb_033363_030 Hb_005337_140--Hb_033363_030 Hb_006243_010 Hb_006243_010 Hb_005337_140--Hb_006243_010 Hb_005337_140--Hb_003654_020 Hb_003767_060--Hb_001369_340 Hb_002010_030 Hb_002010_030 Hb_003767_060--Hb_002010_030 Hb_003767_060--Hb_004017_030 Hb_007462_020 Hb_007462_020 Hb_003767_060--Hb_007462_020 Hb_003654_020--Hb_000186_180 Hb_000732_300 Hb_000732_300 Hb_003654_020--Hb_000732_300 Hb_003654_020--Hb_000031_320 Hb_000186_180--Hb_000031_320 Hb_000167_100 Hb_000167_100 Hb_000186_180--Hb_000167_100 Hb_001677_170 Hb_001677_170 Hb_000186_180--Hb_001677_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0147606 0.0272545 0.00682046 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.033888

CAGE analysis