Hb_006243_010

Information

Type -
Description -
Location Contig6243: 17753-18109
Sequence    

Annotation

kegg
ID rcu:RCOM_0781850
description Glycine-rich cell wall structural protein 2 precursor, putative
nr
ID XP_011018097.1
description PREDICTED: cell wall protein IFF6 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9SQF1
description Glycine-rich cell wall structural protein 2, putative OS=Ricinus communis GN=RCOM_0781850 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51627: 17546-18193
cDNA
(Sanger)
(ID:Location)		 006_I09.ab1: 17579-18193 , 013_M05.ab1: 17579-18193 , 041_B20.ab1: 17933-18195

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006243_010 0.0 - - PREDICTED: cell wall protein IFF6 [Populus euphratica]
2 Hb_004126_050 0.0328442034 - - PREDICTED: L-type lectin-domain containing receptor kinase VII.1 [Tarenaya hassleriana]
3 Hb_000780_160 0.0802152168 - - hypothetical protein RCOM_0483300 [Ricinus communis]
4 Hb_005337_140 0.1098792846 - - PREDICTED: LOW QUALITY PROTEIN: wall-associated receptor kinase 1-like [Jatropha curcas]
5 Hb_000186_180 0.1165093338 - - PREDICTED: uncharacterized protein LOC105649287 [Jatropha curcas]
6 Hb_000061_440 0.1204376639 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
7 Hb_019863_050 0.124630751 - - PREDICTED: uncharacterized protein LOC103343426 [Prunus mume]
8 Hb_000032_590 0.1251676006 - - PREDICTED: glutaredoxin domain-containing cysteine-rich protein 1 [Jatropha curcas]
9 Hb_005240_010 0.1284317638 transcription factor TF Family: NAC PREDICTED: NAC transcription factor NAM-B2 [Jatropha curcas]
10 Hb_171900_110 0.1294344145 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT3-like [Populus euphratica]
11 Hb_000167_100 0.1320102075 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_002211_020 0.1348581042 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 5-like [Jatropha curcas]
13 Hb_003073_040 0.1385652391 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF3.6-like isoform X2 [Populus euphratica]
14 Hb_003654_020 0.1387679159 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
15 Hb_000039_120 0.1464282388 - - PREDICTED: equilibrative nucleotide transporter 3-like [Jatropha curcas]
16 Hb_132259_010 0.1499986252 - - PREDICTED: WAT1-related protein At5g64700 [Jatropha curcas]
17 Hb_033363_030 0.1510786774 - - PREDICTED: serine/threonine-protein kinase STN7, chloroplastic [Jatropha curcas]
18 Hb_032202_010 0.1546791827 - - PREDICTED: subtilisin-like protease SBT1.1 [Jatropha curcas]
19 Hb_002400_260 0.1577820158 - - catalytic, putative [Ricinus communis]
20 Hb_000031_320 0.1578337389 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_006243_010 Hb_006243_010 Hb_004126_050 Hb_004126_050 Hb_006243_010--Hb_004126_050 Hb_000780_160 Hb_000780_160 Hb_006243_010--Hb_000780_160 Hb_005337_140 Hb_005337_140 Hb_006243_010--Hb_005337_140 Hb_000186_180 Hb_000186_180 Hb_006243_010--Hb_000186_180 Hb_000061_440 Hb_000061_440 Hb_006243_010--Hb_000061_440 Hb_019863_050 Hb_019863_050 Hb_006243_010--Hb_019863_050 Hb_004126_050--Hb_000780_160 Hb_004126_050--Hb_005337_140 Hb_005240_010 Hb_005240_010 Hb_004126_050--Hb_005240_010 Hb_171900_110 Hb_171900_110 Hb_004126_050--Hb_171900_110 Hb_004126_050--Hb_000061_440 Hb_000780_160--Hb_171900_110 Hb_000039_120 Hb_000039_120 Hb_000780_160--Hb_000039_120 Hb_000032_590 Hb_000032_590 Hb_000780_160--Hb_000032_590 Hb_000780_160--Hb_019863_050 Hb_002307_120 Hb_002307_120 Hb_005337_140--Hb_002307_120 Hb_031069_040 Hb_031069_040 Hb_005337_140--Hb_031069_040 Hb_003209_150 Hb_003209_150 Hb_005337_140--Hb_003209_150 Hb_033363_030 Hb_033363_030 Hb_005337_140--Hb_033363_030 Hb_003654_020 Hb_003654_020 Hb_005337_140--Hb_003654_020 Hb_000186_180--Hb_003654_020 Hb_002818_160 Hb_002818_160 Hb_000186_180--Hb_002818_160 Hb_000031_320 Hb_000031_320 Hb_000186_180--Hb_000031_320 Hb_000167_100 Hb_000167_100 Hb_000186_180--Hb_000167_100 Hb_000186_180--Hb_002307_120 Hb_001677_170 Hb_001677_170 Hb_000186_180--Hb_001677_170 Hb_004117_320 Hb_004117_320 Hb_000061_440--Hb_004117_320 Hb_005867_050 Hb_005867_050 Hb_000061_440--Hb_005867_050 Hb_004979_080 Hb_004979_080 Hb_000061_440--Hb_004979_080 Hb_000061_440--Hb_019863_050 Hb_011028_030 Hb_011028_030 Hb_019863_050--Hb_011028_030 Hb_019863_050--Hb_033363_030 Hb_002211_020 Hb_002211_020 Hb_019863_050--Hb_002211_020 Hb_000072_240 Hb_000072_240 Hb_019863_050--Hb_000072_240 Hb_046739_010 Hb_046739_010 Hb_019863_050--Hb_046739_010 Hb_019863_050--Hb_000031_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 183.486 123.511 98.57 0.397628 1.09253
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.250587 0 0 0.867674 286.758

CAGE analysis