Hb_000061_440

Information

Type transcription factor
Description TF Family: bHLH
Location Contig61: 374251-376814
Sequence    

Annotation

kegg
ID rcu:RCOM_1470600
description DNA binding protein, putative
nr
ID XP_002514702.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q8GZ38
description Transcription factor UNE10 OS=Arabidopsis thaliana GN=UNE10 PE=2 SV=1
trembl
ID B9RLT3
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_1470600 PE=4 SV=1
Gene Ontology
ID GO:0005634
description transcription factor pif7 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50952: 374259-374864 , PASA_asmbl_50953: 374917-375791
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000061_440 0.0 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
2 Hb_004117_320 0.1119478411 - - PREDICTED: probable serine/threonine-protein kinase WNK5 [Jatropha curcas]
3 Hb_005867_050 0.119938458 - - PREDICTED: protein ECERIFERUM 1 [Jatropha curcas]
4 Hb_006243_010 0.1204376639 - - PREDICTED: cell wall protein IFF6 [Populus euphratica]
5 Hb_004979_080 0.1222707334 - - kinase, putative [Ricinus communis]
6 Hb_019863_050 0.1240504429 - - PREDICTED: uncharacterized protein LOC103343426 [Prunus mume]
7 Hb_004126_050 0.1252108709 - - PREDICTED: L-type lectin-domain containing receptor kinase VII.1 [Tarenaya hassleriana]
8 Hb_033363_030 0.1261641768 - - PREDICTED: serine/threonine-protein kinase STN7, chloroplastic [Jatropha curcas]
9 Hb_002400_260 0.1264762297 - - catalytic, putative [Ricinus communis]
10 Hb_000780_160 0.1271336404 - - hypothetical protein RCOM_0483300 [Ricinus communis]
11 Hb_007666_010 0.1300889631 - - PREDICTED: uncharacterized protein LOC105649266 [Jatropha curcas]
12 Hb_003494_150 0.1328386696 - - Silicon transporter, putative [Ricinus communis]
13 Hb_000668_180 0.1331703172 - - hypothetical protein POPTR_0005s16490g [Populus trichocarpa]
14 Hb_022693_080 0.1339492142 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]
15 Hb_002842_010 0.1374763083 - - sulfate transporter, putative [Ricinus communis]
16 Hb_119600_030 0.1480198535 - - PREDICTED: uncharacterized protein LOC105635187 [Jatropha curcas]
17 Hb_008165_050 0.1492330201 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
18 Hb_005337_140 0.1492960488 - - PREDICTED: LOW QUALITY PROTEIN: wall-associated receptor kinase 1-like [Jatropha curcas]
19 Hb_005288_100 0.1495465104 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
20 Hb_003050_330 0.1507864178 - - hypothetical protein JCGZ_04591 [Jatropha curcas]

Gene co-expression network

sample Hb_000061_440 Hb_000061_440 Hb_004117_320 Hb_004117_320 Hb_000061_440--Hb_004117_320 Hb_005867_050 Hb_005867_050 Hb_000061_440--Hb_005867_050 Hb_006243_010 Hb_006243_010 Hb_000061_440--Hb_006243_010 Hb_004979_080 Hb_004979_080 Hb_000061_440--Hb_004979_080 Hb_019863_050 Hb_019863_050 Hb_000061_440--Hb_019863_050 Hb_004126_050 Hb_004126_050 Hb_000061_440--Hb_004126_050 Hb_010402_040 Hb_010402_040 Hb_004117_320--Hb_010402_040 Hb_004117_320--Hb_005867_050 Hb_002226_090 Hb_002226_090 Hb_004117_320--Hb_002226_090 Hb_022693_080 Hb_022693_080 Hb_004117_320--Hb_022693_080 Hb_004117_320--Hb_004979_080 Hb_004291_050 Hb_004291_050 Hb_004117_320--Hb_004291_050 Hb_005867_050--Hb_010402_040 Hb_005867_050--Hb_022693_080 Hb_005867_050--Hb_002226_090 Hb_005867_050--Hb_004979_080 Hb_006243_010--Hb_004126_050 Hb_000780_160 Hb_000780_160 Hb_006243_010--Hb_000780_160 Hb_005337_140 Hb_005337_140 Hb_006243_010--Hb_005337_140 Hb_000186_180 Hb_000186_180 Hb_006243_010--Hb_000186_180 Hb_006243_010--Hb_019863_050 Hb_096224_050 Hb_096224_050 Hb_004979_080--Hb_096224_050 Hb_000644_010 Hb_000644_010 Hb_004979_080--Hb_000644_010 Hb_004979_070 Hb_004979_070 Hb_004979_080--Hb_004979_070 Hb_033363_030 Hb_033363_030 Hb_004979_080--Hb_033363_030 Hb_007904_110 Hb_007904_110 Hb_004979_080--Hb_007904_110 Hb_000668_180 Hb_000668_180 Hb_004979_080--Hb_000668_180 Hb_011028_030 Hb_011028_030 Hb_019863_050--Hb_011028_030 Hb_019863_050--Hb_033363_030 Hb_002211_020 Hb_002211_020 Hb_019863_050--Hb_002211_020 Hb_000072_240 Hb_000072_240 Hb_019863_050--Hb_000072_240 Hb_046739_010 Hb_046739_010 Hb_019863_050--Hb_046739_010 Hb_000031_320 Hb_000031_320 Hb_019863_050--Hb_000031_320 Hb_004126_050--Hb_000780_160 Hb_004126_050--Hb_005337_140 Hb_005240_010 Hb_005240_010 Hb_004126_050--Hb_005240_010 Hb_171900_110 Hb_171900_110 Hb_004126_050--Hb_171900_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.181958 3.65302 3.07409 3.37007 0.0128674 0.0533626
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0313011 0 0 0.0982974 9.63299

CAGE analysis