Hb_000072_240

Information

Type transcription factor
Description TF Family: C2C2-CO-like
Location Contig72: 369866-372115
Sequence    

Annotation

kegg
ID rcu:RCOM_0446700
description zinc finger protein, putative
nr
ID XP_002532886.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q96502
description Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana GN=COL2 PE=1 SV=1
trembl
ID B9T3R7
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_0446700 PE=4 SV=1
Gene Ontology
ID GO:0005622
description constans-like 1 protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55603: 369767-372096
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000072_240 0.0 transcription factor TF Family: C2C2-CO-like zinc finger protein, putative [Ricinus communis]
2 Hb_000594_150 0.0879462157 - - PREDICTED: serine/threonine-protein kinase STN7, chloroplastic-like isoform X1 [Nelumbo nucifera]
3 Hb_004976_080 0.1071276821 desease resistance Gene Name: NB-ARC PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
4 Hb_019863_050 0.1093780653 - - PREDICTED: uncharacterized protein LOC103343426 [Prunus mume]
5 Hb_010180_050 0.114253723 - - PREDICTED: CBL-interacting protein kinase 2 [Jatropha curcas]
6 Hb_003126_010 0.1239620468 - - PREDICTED: oligopeptide transporter 7-like isoform X1 [Malus domestica]
7 Hb_002211_020 0.1273963457 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 5-like [Jatropha curcas]
8 Hb_019837_010 0.1343039354 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000926_070 0.1411093194 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004907_070 0.1464602084 - - PREDICTED: protein phosphatase 2C 37 [Jatropha curcas]
11 Hb_000049_290 0.1481179275 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
12 Hb_011028_030 0.1506720577 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003970_010 0.1551534969 - - PREDICTED: sigma factor binding protein 1, chloroplastic-like [Populus euphratica]
14 Hb_010904_010 0.1563455726 - - PREDICTED: probable receptor-like protein kinase At5g39030 isoform X2 [Jatropha curcas]
15 Hb_003643_080 0.1571211335 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
16 Hb_000331_220 0.1575306157 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000780_160 0.1576204095 - - hypothetical protein RCOM_0483300 [Ricinus communis]
18 Hb_000230_250 0.1583937231 - - PREDICTED: pyruvate, phosphate dikinase, chloroplastic [Jatropha curcas]
19 Hb_000808_260 0.1585357653 - - hypothetical protein RCOM_1434920 [Ricinus communis]
20 Hb_000107_090 0.1586920833 - - PREDICTED: kinesin KP1 [Jatropha curcas]

Gene co-expression network

sample Hb_000072_240 Hb_000072_240 Hb_000594_150 Hb_000594_150 Hb_000072_240--Hb_000594_150 Hb_004976_080 Hb_004976_080 Hb_000072_240--Hb_004976_080 Hb_019863_050 Hb_019863_050 Hb_000072_240--Hb_019863_050 Hb_010180_050 Hb_010180_050 Hb_000072_240--Hb_010180_050 Hb_003126_010 Hb_003126_010 Hb_000072_240--Hb_003126_010 Hb_002211_020 Hb_002211_020 Hb_000072_240--Hb_002211_020 Hb_000594_150--Hb_004976_080 Hb_019837_010 Hb_019837_010 Hb_000594_150--Hb_019837_010 Hb_002999_130 Hb_002999_130 Hb_000594_150--Hb_002999_130 Hb_004907_070 Hb_004907_070 Hb_000594_150--Hb_004907_070 Hb_000594_150--Hb_010180_050 Hb_004976_080--Hb_019837_010 Hb_004976_080--Hb_004907_070 Hb_000035_060 Hb_000035_060 Hb_004976_080--Hb_000035_060 Hb_004525_020 Hb_004525_020 Hb_004976_080--Hb_004525_020 Hb_011028_030 Hb_011028_030 Hb_019863_050--Hb_011028_030 Hb_033363_030 Hb_033363_030 Hb_019863_050--Hb_033363_030 Hb_019863_050--Hb_002211_020 Hb_046739_010 Hb_046739_010 Hb_019863_050--Hb_046739_010 Hb_000031_320 Hb_000031_320 Hb_019863_050--Hb_000031_320 Hb_010180_050--Hb_002999_130 Hb_005054_320 Hb_005054_320 Hb_010180_050--Hb_005054_320 Hb_000230_250 Hb_000230_250 Hb_010180_050--Hb_000230_250 Hb_003106_240 Hb_003106_240 Hb_010180_050--Hb_003106_240 Hb_000049_290 Hb_000049_290 Hb_003126_010--Hb_000049_290 Hb_022487_010 Hb_022487_010 Hb_003126_010--Hb_022487_010 Hb_000331_220 Hb_000331_220 Hb_003126_010--Hb_000331_220 Hb_000363_050 Hb_000363_050 Hb_003126_010--Hb_000363_050 Hb_003126_010--Hb_000594_150 Hb_003970_010 Hb_003970_010 Hb_002211_020--Hb_003970_010 Hb_010904_010 Hb_010904_010 Hb_002211_020--Hb_010904_010 Hb_002211_020--Hb_011028_030 Hb_002211_020--Hb_000031_320 Hb_000110_040 Hb_000110_040 Hb_002211_020--Hb_000110_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.858296 26.2298 22.1366 9.24161 0.137352 0.418385
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.654731 0.772624 0.0966184 3.39436 41.6831

CAGE analysis