Hb_004525_020

Information

Type transcription factor
Description TF Family: zf-HD
Location Contig4525: 16742-17791
Sequence    

Annotation

kegg
ID pop:POPTR_0005s12420g
description hypothetical protein
nr
ID XP_012076140.1
description PREDICTED: zinc-finger homeodomain protein 6-like [Jatropha curcas]
swissprot
ID Q9ZPW7
description Zinc-finger homeodomain protein 6 OS=Arabidopsis thaliana GN=ZHD6 PE=1 SV=1
trembl
ID A0A067KRE0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12803 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43221: 16472-18645
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004525_020 0.0 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 6-like [Jatropha curcas]
2 Hb_000116_330 0.0967690066 - - PREDICTED: glutamate receptor 3.6-like [Jatropha curcas]
3 Hb_000027_100 0.1048824611 - - hypothetical protein VITISV_039936 [Vitis vinifera]
4 Hb_003683_200 0.1064964907 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
5 Hb_000365_220 0.1245674881 - - protein phosphatase-1, putative [Ricinus communis]
6 Hb_001160_020 0.1247149538 transcription factor TF Family: NF-YA Nuclear transcription factor Y subunit A-3, putative [Ricinus communis]
7 Hb_000417_250 0.125573845 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 65 [Jatropha curcas]
8 Hb_003849_030 0.1318168828 - - hypothetical protein AALP_AA5G029900 [Arabis alpina]
9 Hb_004976_080 0.1319266042 desease resistance Gene Name: NB-ARC PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
10 Hb_002849_120 0.1340739333 - - ferric reductase oxidase [Manihot esculenta]
11 Hb_000680_020 0.1395803395 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
12 Hb_004767_020 0.1423908643 - - Lysosomal Pro-X carboxypeptidase, putative [Ricinus communis]
13 Hb_002783_140 0.1477291154 - - PREDICTED: uncharacterized protein LOC105635332 [Jatropha curcas]
14 Hb_019837_010 0.1486959113 - - conserved hypothetical protein [Ricinus communis]
15 Hb_007113_020 0.149670078 - - -
16 Hb_002571_080 0.1497788938 - - secondary cell wall-related glycosyltransferase family 14 [Populus tremula x Populus tremuloides]
17 Hb_007747_100 0.1514538819 - - PREDICTED: probable F-box protein At1g60180 [Jatropha curcas]
18 Hb_001501_020 0.1521070427 - - PREDICTED: receptor-like protein kinase [Jatropha curcas]
19 Hb_005999_020 0.1522134592 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like [Jatropha curcas]
20 Hb_005488_030 0.1527388024 - - F3F9.11 [Arabidopsis lyrata subsp. lyrata]

Gene co-expression network

sample Hb_004525_020 Hb_004525_020 Hb_000116_330 Hb_000116_330 Hb_004525_020--Hb_000116_330 Hb_000027_100 Hb_000027_100 Hb_004525_020--Hb_000027_100 Hb_003683_200 Hb_003683_200 Hb_004525_020--Hb_003683_200 Hb_000365_220 Hb_000365_220 Hb_004525_020--Hb_000365_220 Hb_001160_020 Hb_001160_020 Hb_004525_020--Hb_001160_020 Hb_000417_250 Hb_000417_250 Hb_004525_020--Hb_000417_250 Hb_000116_330--Hb_003683_200 Hb_000116_330--Hb_000417_250 Hb_000116_330--Hb_001160_020 Hb_000680_020 Hb_000680_020 Hb_000116_330--Hb_000680_020 Hb_000261_370 Hb_000261_370 Hb_000116_330--Hb_000261_370 Hb_018616_040 Hb_018616_040 Hb_000027_100--Hb_018616_040 Hb_000027_100--Hb_000116_330 Hb_000027_100--Hb_000417_250 Hb_001556_020 Hb_001556_020 Hb_000027_100--Hb_001556_020 Hb_007951_070 Hb_007951_070 Hb_000027_100--Hb_007951_070 Hb_003683_200--Hb_000680_020 Hb_001836_010 Hb_001836_010 Hb_003683_200--Hb_001836_010 Hb_001856_110 Hb_001856_110 Hb_003683_200--Hb_001856_110 Hb_002849_120 Hb_002849_120 Hb_003683_200--Hb_002849_120 Hb_008494_090 Hb_008494_090 Hb_000365_220--Hb_008494_090 Hb_000522_010 Hb_000522_010 Hb_000365_220--Hb_000522_010 Hb_000417_410 Hb_000417_410 Hb_000365_220--Hb_000417_410 Hb_002888_040 Hb_002888_040 Hb_000365_220--Hb_002888_040 Hb_003517_100 Hb_003517_100 Hb_000365_220--Hb_003517_100 Hb_007747_100 Hb_007747_100 Hb_001160_020--Hb_007747_100 Hb_003849_030 Hb_003849_030 Hb_001160_020--Hb_003849_030 Hb_001160_020--Hb_002849_120 Hb_001153_090 Hb_001153_090 Hb_001160_020--Hb_001153_090 Hb_000318_050 Hb_000318_050 Hb_001160_020--Hb_000318_050 Hb_023344_130 Hb_023344_130 Hb_001160_020--Hb_023344_130 Hb_029576_100 Hb_029576_100 Hb_000417_250--Hb_029576_100 Hb_013786_010 Hb_013786_010 Hb_000417_250--Hb_013786_010 Hb_000417_250--Hb_000261_370 Hb_000417_250--Hb_000680_020 Hb_127661_010 Hb_127661_010 Hb_000417_250--Hb_127661_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.171907 13.2106 12.752 4.51759 0.0209088 0.0680314
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.429349 0.41274 0.900626 7.92789 14.5569

CAGE analysis