Hb_018616_040

Information

Type -
Description -
Location Contig18616: 65501-66950
Sequence    

Annotation

kegg
ID pop:POPTR_0005s03200g
description hypothetical protein
nr
ID XP_012068500.1
description PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
swissprot
ID Q40392
description TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1
trembl
ID U5GDJ9
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0005s03200g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_018616_040 0.0 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
2 Hb_000027_100 0.150029086 - - hypothetical protein VITISV_039936 [Vitis vinifera]
3 Hb_007951_070 0.1599060479 desease resistance Gene Name: NB-ARC Disease resistance protein RFL1, putative [Ricinus communis]
4 Hb_004525_020 0.1699590816 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 6-like [Jatropha curcas]
5 Hb_004920_110 0.1749927537 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000847_020 0.1776878116 - - PREDICTED: ras-related protein RABA5b [Jatropha curcas]
7 Hb_000760_080 0.1798399931 - - mutt domain protein, putative [Ricinus communis]
8 Hb_005488_030 0.1818885314 - - F3F9.11 [Arabidopsis lyrata subsp. lyrata]
9 Hb_001141_040 0.1819610396 - - PREDICTED: protein NETWORKED 1A [Jatropha curcas]
10 Hb_023344_130 0.1824271439 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
11 Hb_001754_260 0.1839524121 - - PREDICTED: uncharacterized protein LOC105643409 isoform X1 [Jatropha curcas]
12 Hb_094148_010 0.1855699407 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
13 Hb_000116_330 0.1902448122 - - PREDICTED: glutamate receptor 3.6-like [Jatropha curcas]
14 Hb_000692_110 0.1902597888 - - PREDICTED: NEP1-interacting protein-like 1 [Jatropha curcas]
15 Hb_001160_020 0.1903881513 transcription factor TF Family: NF-YA Nuclear transcription factor Y subunit A-3, putative [Ricinus communis]
16 Hb_007747_100 0.1911539332 - - PREDICTED: probable F-box protein At1g60180 [Jatropha curcas]
17 Hb_005568_050 0.1917070038 - - ascorbate peroxidase [Hevea brasiliensis]
18 Hb_000024_130 0.1942825039 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001722_070 0.1950058877 transcription factor TF Family: C2H2 PREDICTED: UBX domain-containing protein 6 [Jatropha curcas]
20 Hb_000108_090 0.1952188864 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]

Gene co-expression network

sample Hb_018616_040 Hb_018616_040 Hb_000027_100 Hb_000027_100 Hb_018616_040--Hb_000027_100 Hb_007951_070 Hb_007951_070 Hb_018616_040--Hb_007951_070 Hb_004525_020 Hb_004525_020 Hb_018616_040--Hb_004525_020 Hb_004920_110 Hb_004920_110 Hb_018616_040--Hb_004920_110 Hb_000847_020 Hb_000847_020 Hb_018616_040--Hb_000847_020 Hb_000760_080 Hb_000760_080 Hb_018616_040--Hb_000760_080 Hb_000027_100--Hb_004525_020 Hb_000116_330 Hb_000116_330 Hb_000027_100--Hb_000116_330 Hb_000417_250 Hb_000417_250 Hb_000027_100--Hb_000417_250 Hb_001556_020 Hb_001556_020 Hb_000027_100--Hb_001556_020 Hb_000027_100--Hb_007951_070 Hb_000120_870 Hb_000120_870 Hb_007951_070--Hb_000120_870 Hb_007237_010 Hb_007237_010 Hb_007951_070--Hb_007237_010 Hb_007951_070--Hb_000116_330 Hb_001141_040 Hb_001141_040 Hb_007951_070--Hb_001141_040 Hb_008033_060 Hb_008033_060 Hb_007951_070--Hb_008033_060 Hb_004525_020--Hb_000116_330 Hb_003683_200 Hb_003683_200 Hb_004525_020--Hb_003683_200 Hb_000365_220 Hb_000365_220 Hb_004525_020--Hb_000365_220 Hb_001160_020 Hb_001160_020 Hb_004525_020--Hb_001160_020 Hb_004525_020--Hb_000417_250 Hb_021576_120 Hb_021576_120 Hb_004920_110--Hb_021576_120 Hb_000254_010 Hb_000254_010 Hb_004920_110--Hb_000254_010 Hb_004920_110--Hb_000847_020 Hb_083412_010 Hb_083412_010 Hb_004920_110--Hb_083412_010 Hb_001048_100 Hb_001048_100 Hb_004920_110--Hb_001048_100 Hb_000616_010 Hb_000616_010 Hb_004920_110--Hb_000616_010 Hb_000527_140 Hb_000527_140 Hb_000847_020--Hb_000527_140 Hb_000024_130 Hb_000024_130 Hb_000847_020--Hb_000024_130 Hb_064985_010 Hb_064985_010 Hb_000847_020--Hb_064985_010 Hb_003142_060 Hb_003142_060 Hb_000847_020--Hb_003142_060 Hb_000527_070 Hb_000527_070 Hb_000847_020--Hb_000527_070 Hb_004656_010 Hb_004656_010 Hb_000847_020--Hb_004656_010 Hb_000760_080--Hb_001048_100 Hb_000760_080--Hb_000024_130 Hb_005568_050 Hb_005568_050 Hb_000760_080--Hb_005568_050 Hb_002503_050 Hb_002503_050 Hb_000760_080--Hb_002503_050 Hb_033312_050 Hb_033312_050 Hb_000760_080--Hb_033312_050 Hb_000731_210 Hb_000731_210 Hb_000760_080--Hb_000731_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.502738 0.523222 0.271443 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0748067 0 0.105595 0.549083 0.468421

CAGE analysis