Hb_000120_870

Information

Type rubber biosynthesis
Description Gene Name: CPT6
Location Contig120: 677195-678316
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_870 0.0 rubber biosynthesis Gene Name: CPT6 -
2 Hb_007951_070 0.1029695268 desease resistance Gene Name: NB-ARC Disease resistance protein RFL1, putative [Ricinus communis]
3 Hb_007237_010 0.1353558494 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000116_330 0.1435215642 - - PREDICTED: glutamate receptor 3.6-like [Jatropha curcas]
5 Hb_003683_200 0.1517261551 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
6 Hb_000191_100 0.1587262446 - - cytochrome P450, putative [Ricinus communis]
7 Hb_003077_140 0.1631211412 - - hypothetical protein JCGZ_16294 [Jatropha curcas]
8 Hb_004525_020 0.1636445373 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 6-like [Jatropha curcas]
9 Hb_000027_100 0.1640544144 - - hypothetical protein VITISV_039936 [Vitis vinifera]
10 Hb_007747_100 0.1673191024 - - PREDICTED: probable F-box protein At1g60180 [Jatropha curcas]
11 Hb_001160_020 0.1680181462 transcription factor TF Family: NF-YA Nuclear transcription factor Y subunit A-3, putative [Ricinus communis]
12 Hb_001153_090 0.172739221 - - PREDICTED: protein FAM63A [Jatropha curcas]
13 Hb_004605_020 0.1751006677 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 [Jatropha curcas]
14 Hb_005488_030 0.1757461919 - - F3F9.11 [Arabidopsis lyrata subsp. lyrata]
15 Hb_004032_330 0.1760956811 - - PREDICTED: calvin cycle protein CP12-3, chloroplastic [Jatropha curcas]
16 Hb_031862_200 0.1761951859 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]
17 Hb_000959_010 0.1764288713 - - PREDICTED: violaxanthin de-epoxidase, chloroplastic [Jatropha curcas]
18 Hb_000365_220 0.1774151187 - - protein phosphatase-1, putative [Ricinus communis]
19 Hb_000680_020 0.179004712 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
20 Hb_002571_080 0.1795244446 - - secondary cell wall-related glycosyltransferase family 14 [Populus tremula x Populus tremuloides]

Gene co-expression network

sample Hb_000120_870 Hb_000120_870 Hb_007951_070 Hb_007951_070 Hb_000120_870--Hb_007951_070 Hb_007237_010 Hb_007237_010 Hb_000120_870--Hb_007237_010 Hb_000116_330 Hb_000116_330 Hb_000120_870--Hb_000116_330 Hb_003683_200 Hb_003683_200 Hb_000120_870--Hb_003683_200 Hb_000191_100 Hb_000191_100 Hb_000120_870--Hb_000191_100 Hb_003077_140 Hb_003077_140 Hb_000120_870--Hb_003077_140 Hb_007951_070--Hb_007237_010 Hb_007951_070--Hb_000116_330 Hb_001141_040 Hb_001141_040 Hb_007951_070--Hb_001141_040 Hb_008033_060 Hb_008033_060 Hb_007951_070--Hb_008033_060 Hb_018616_040 Hb_018616_040 Hb_007951_070--Hb_018616_040 Hb_000959_010 Hb_000959_010 Hb_007237_010--Hb_000959_010 Hb_060198_010 Hb_060198_010 Hb_007237_010--Hb_060198_010 Hb_006040_170 Hb_006040_170 Hb_007237_010--Hb_006040_170 Hb_000465_450 Hb_000465_450 Hb_007237_010--Hb_000465_450 Hb_000116_330--Hb_003683_200 Hb_004525_020 Hb_004525_020 Hb_000116_330--Hb_004525_020 Hb_000417_250 Hb_000417_250 Hb_000116_330--Hb_000417_250 Hb_001160_020 Hb_001160_020 Hb_000116_330--Hb_001160_020 Hb_000680_020 Hb_000680_020 Hb_000116_330--Hb_000680_020 Hb_000261_370 Hb_000261_370 Hb_000116_330--Hb_000261_370 Hb_003683_200--Hb_000680_020 Hb_001836_010 Hb_001836_010 Hb_003683_200--Hb_001836_010 Hb_001856_110 Hb_001856_110 Hb_003683_200--Hb_001856_110 Hb_003683_200--Hb_004525_020 Hb_002849_120 Hb_002849_120 Hb_003683_200--Hb_002849_120 Hb_016637_020 Hb_016637_020 Hb_000191_100--Hb_016637_020 Hb_031862_200 Hb_031862_200 Hb_000191_100--Hb_031862_200 Hb_001819_010 Hb_001819_010 Hb_000191_100--Hb_001819_010 Hb_029866_110 Hb_029866_110 Hb_000191_100--Hb_029866_110 Hb_007205_020 Hb_007205_020 Hb_000191_100--Hb_007205_020 Hb_123560_050 Hb_123560_050 Hb_000191_100--Hb_123560_050 Hb_000767_010 Hb_000767_010 Hb_003077_140--Hb_000767_010 Hb_001153_090 Hb_001153_090 Hb_003077_140--Hb_001153_090 Hb_033153_040 Hb_033153_040 Hb_003077_140--Hb_033153_040 Hb_003077_140--Hb_123560_050 Hb_001357_360 Hb_001357_360 Hb_003077_140--Hb_001357_360 Hb_002818_070 Hb_002818_070 Hb_003077_140--Hb_002818_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 5.82752 3.18837 2.29646 0 0.292636
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.89509 3.72377 6.36496

CAGE analysis