Hb_007951_070

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig7951: 55201-57839
Sequence    

Annotation

kegg
ID rcu:RCOM_0898870
description Disease resistance protein RFL1, putative (EC:3.1.3.16)
nr
ID XP_002517610.1
description Disease resistance protein RFL1, putative [Ricinus communis]
swissprot
ID Q8RXS5
description Probable disease resistance protein At5g63020 OS=Arabidopsis thaliana GN=At5g63020 PE=2 SV=2
trembl
ID B9RV41
description Disease resistance protein RFL1, putative OS=Ricinus communis GN=RCOM_0898870 PE=4 SV=1
Gene Ontology
ID GO:0016787
description disease resistance protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007951_070 0.0 desease resistance Gene Name: NB-ARC Disease resistance protein RFL1, putative [Ricinus communis]
2 Hb_000120_870 0.1029695268 rubber biosynthesis Gene Name: CPT6 -
3 Hb_007237_010 0.1425484241 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000116_330 0.1469099023 - - PREDICTED: glutamate receptor 3.6-like [Jatropha curcas]
5 Hb_001141_040 0.1547547449 - - PREDICTED: protein NETWORKED 1A [Jatropha curcas]
6 Hb_008033_060 0.1582769219 - - PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]
7 Hb_018616_040 0.1599060479 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
8 Hb_000027_100 0.1611436152 - - hypothetical protein VITISV_039936 [Vitis vinifera]
9 Hb_001754_260 0.161347434 - - PREDICTED: uncharacterized protein LOC105643409 isoform X1 [Jatropha curcas]
10 Hb_000191_100 0.1629641589 - - cytochrome P450, putative [Ricinus communis]
11 Hb_003683_200 0.1739990852 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
12 Hb_004525_020 0.1746488057 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 6-like [Jatropha curcas]
13 Hb_007747_100 0.1809346893 - - PREDICTED: probable F-box protein At1g60180 [Jatropha curcas]
14 Hb_127661_010 0.1854389607 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_016637_020 0.1859659718 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
16 Hb_001160_020 0.1861148844 transcription factor TF Family: NF-YA Nuclear transcription factor Y subunit A-3, putative [Ricinus communis]
17 Hb_002888_060 0.187003851 - - PREDICTED: phospholipase SGR2 isoform X1 [Jatropha curcas]
18 Hb_023344_130 0.1870694613 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
19 Hb_005488_030 0.189946207 - - F3F9.11 [Arabidopsis lyrata subsp. lyrata]
20 Hb_005496_170 0.191740185 - - sigma factor sigb regulation protein rsbq, putative [Ricinus communis]

Gene co-expression network

sample Hb_007951_070 Hb_007951_070 Hb_000120_870 Hb_000120_870 Hb_007951_070--Hb_000120_870 Hb_007237_010 Hb_007237_010 Hb_007951_070--Hb_007237_010 Hb_000116_330 Hb_000116_330 Hb_007951_070--Hb_000116_330 Hb_001141_040 Hb_001141_040 Hb_007951_070--Hb_001141_040 Hb_008033_060 Hb_008033_060 Hb_007951_070--Hb_008033_060 Hb_018616_040 Hb_018616_040 Hb_007951_070--Hb_018616_040 Hb_000120_870--Hb_007237_010 Hb_000120_870--Hb_000116_330 Hb_003683_200 Hb_003683_200 Hb_000120_870--Hb_003683_200 Hb_000191_100 Hb_000191_100 Hb_000120_870--Hb_000191_100 Hb_003077_140 Hb_003077_140 Hb_000120_870--Hb_003077_140 Hb_000959_010 Hb_000959_010 Hb_007237_010--Hb_000959_010 Hb_060198_010 Hb_060198_010 Hb_007237_010--Hb_060198_010 Hb_006040_170 Hb_006040_170 Hb_007237_010--Hb_006040_170 Hb_000465_450 Hb_000465_450 Hb_007237_010--Hb_000465_450 Hb_000116_330--Hb_003683_200 Hb_004525_020 Hb_004525_020 Hb_000116_330--Hb_004525_020 Hb_000417_250 Hb_000417_250 Hb_000116_330--Hb_000417_250 Hb_001160_020 Hb_001160_020 Hb_000116_330--Hb_001160_020 Hb_000680_020 Hb_000680_020 Hb_000116_330--Hb_000680_020 Hb_000261_370 Hb_000261_370 Hb_000116_330--Hb_000261_370 Hb_002888_060 Hb_002888_060 Hb_001141_040--Hb_002888_060 Hb_001141_040--Hb_000191_100 Hb_005568_050 Hb_005568_050 Hb_001141_040--Hb_005568_050 Hb_002811_020 Hb_002811_020 Hb_001141_040--Hb_002811_020 Hb_000442_170 Hb_000442_170 Hb_001141_040--Hb_000442_170 Hb_000776_020 Hb_000776_020 Hb_001141_040--Hb_000776_020 Hb_001096_020 Hb_001096_020 Hb_008033_060--Hb_001096_020 Hb_000649_180 Hb_000649_180 Hb_008033_060--Hb_000649_180 Hb_008033_060--Hb_007237_010 Hb_000445_030 Hb_000445_030 Hb_008033_060--Hb_000445_030 Hb_000692_110 Hb_000692_110 Hb_008033_060--Hb_000692_110 Hb_000027_100 Hb_000027_100 Hb_018616_040--Hb_000027_100 Hb_018616_040--Hb_004525_020 Hb_004920_110 Hb_004920_110 Hb_018616_040--Hb_004920_110 Hb_000847_020 Hb_000847_020 Hb_018616_040--Hb_000847_020 Hb_000760_080 Hb_000760_080 Hb_018616_040--Hb_000760_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.97264 2.68202 1.6033 0.0139453 0.0134926
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 1.06598 3.81811 4.61314

CAGE analysis