Hb_004920_110

Information

Type -
Description -
Location Contig4920: 86552-88582
Sequence    

Annotation

kegg
ID rcu:RCOM_1347140
description hypothetical protein
nr
ID XP_002515281.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RNE2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1347140 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45341: 87025-88557
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004920_110 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_021576_120 0.1434976477 - - DNA-directed RNA polymerase subunit, putative [Ricinus communis]
3 Hb_000254_010 0.1489384047 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Jatropha curcas]
4 Hb_000847_020 0.1640591355 - - PREDICTED: ras-related protein RABA5b [Jatropha curcas]
5 Hb_083412_010 0.166972287 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
6 Hb_001048_100 0.167199515 - - PREDICTED: lysosomal Pro-X carboxypeptidase [Jatropha curcas]
7 Hb_000616_010 0.169106873 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000692_110 0.1704088313 - - PREDICTED: NEP1-interacting protein-like 1 [Jatropha curcas]
9 Hb_000760_080 0.1740104048 - - mutt domain protein, putative [Ricinus communis]
10 Hb_018616_040 0.1749927537 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
11 Hb_001754_260 0.1802126552 - - PREDICTED: uncharacterized protein LOC105643409 isoform X1 [Jatropha curcas]
12 Hb_000453_130 0.1844562978 - - PREDICTED: protein kinase 2A, chloroplastic-like [Jatropha curcas]
13 Hb_000340_350 0.1869831678 - - PREDICTED: sugar transporter ERD6-like 7 isoform X1 [Jatropha curcas]
14 Hb_033312_050 0.1882257972 - - PREDICTED: uncharacterized protein LOC105638598, partial [Jatropha curcas]
15 Hb_068576_010 0.1924005844 - - hypothetical protein JCGZ_21627 [Jatropha curcas]
16 Hb_002477_100 0.1926162311 - - PREDICTED: protein Brevis radix-like 2 [Jatropha curcas]
17 Hb_007951_070 0.1937412181 desease resistance Gene Name: NB-ARC Disease resistance protein RFL1, putative [Ricinus communis]
18 Hb_001240_050 0.1959683262 - - PREDICTED: CSC1-like protein At1g32090 [Jatropha curcas]
19 Hb_001141_040 0.1981349077 - - PREDICTED: protein NETWORKED 1A [Jatropha curcas]
20 Hb_184008_010 0.1998058037 - - putative LRR receptor-like serine/threonine-protein kinase [Morus notabilis]

Gene co-expression network

sample Hb_004920_110 Hb_004920_110 Hb_021576_120 Hb_021576_120 Hb_004920_110--Hb_021576_120 Hb_000254_010 Hb_000254_010 Hb_004920_110--Hb_000254_010 Hb_000847_020 Hb_000847_020 Hb_004920_110--Hb_000847_020 Hb_083412_010 Hb_083412_010 Hb_004920_110--Hb_083412_010 Hb_001048_100 Hb_001048_100 Hb_004920_110--Hb_001048_100 Hb_000616_010 Hb_000616_010 Hb_004920_110--Hb_000616_010 Hb_008747_010 Hb_008747_010 Hb_021576_120--Hb_008747_010 Hb_002597_020 Hb_002597_020 Hb_021576_120--Hb_002597_020 Hb_021576_120--Hb_000254_010 Hb_002909_080 Hb_002909_080 Hb_021576_120--Hb_002909_080 Hb_068576_010 Hb_068576_010 Hb_021576_120--Hb_068576_010 Hb_000254_010--Hb_001048_100 Hb_001189_100 Hb_001189_100 Hb_000254_010--Hb_001189_100 Hb_042202_020 Hb_042202_020 Hb_000254_010--Hb_042202_020 Hb_033234_010 Hb_033234_010 Hb_000254_010--Hb_033234_010 Hb_000254_010--Hb_000847_020 Hb_000024_130 Hb_000024_130 Hb_000254_010--Hb_000024_130 Hb_000527_140 Hb_000527_140 Hb_000847_020--Hb_000527_140 Hb_000847_020--Hb_000024_130 Hb_064985_010 Hb_064985_010 Hb_000847_020--Hb_064985_010 Hb_003142_060 Hb_003142_060 Hb_000847_020--Hb_003142_060 Hb_000527_070 Hb_000527_070 Hb_000847_020--Hb_000527_070 Hb_004656_010 Hb_004656_010 Hb_000847_020--Hb_004656_010 Hb_003881_020 Hb_003881_020 Hb_083412_010--Hb_003881_020 Hb_039022_020 Hb_039022_020 Hb_083412_010--Hb_039022_020 Hb_000096_210 Hb_000096_210 Hb_083412_010--Hb_000096_210 Hb_000501_110 Hb_000501_110 Hb_083412_010--Hb_000501_110 Hb_014250_010 Hb_014250_010 Hb_083412_010--Hb_014250_010 Hb_137272_010 Hb_137272_010 Hb_083412_010--Hb_137272_010 Hb_031385_010 Hb_031385_010 Hb_001048_100--Hb_031385_010 Hb_000760_080 Hb_000760_080 Hb_001048_100--Hb_000760_080 Hb_000731_210 Hb_000731_210 Hb_001048_100--Hb_000731_210 Hb_002301_370 Hb_002301_370 Hb_001048_100--Hb_002301_370 Hb_000230_360 Hb_000230_360 Hb_001048_100--Hb_000230_360 Hb_000061_310 Hb_000061_310 Hb_001048_100--Hb_000061_310 Hb_000692_110 Hb_000692_110 Hb_000616_010--Hb_000692_110 Hb_021346_020 Hb_021346_020 Hb_000616_010--Hb_021346_020 Hb_005766_010 Hb_005766_010 Hb_000616_010--Hb_005766_010 Hb_000866_190 Hb_000866_190 Hb_000616_010--Hb_000866_190 Hb_000616_010--Hb_014250_010 Hb_005663_090 Hb_005663_090 Hb_000616_010--Hb_005663_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0979696 1.9074 3.08589 1.34328 0 0.0449945
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.742732 2.79866 1.52569

CAGE analysis