Hb_002597_020

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig2597: 39902-48384
Sequence    

Annotation

kegg
ID cit:102623211
description putative disease resistance protein RGA1-like
nr
ID XP_012065986.1
description PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
swissprot
ID Q7XBQ9
description Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1
trembl
ID A0A067LG32
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_27058 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26921: 40021-42071 , PASA_asmbl_26922: 40175-40480
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002597_020 0.0 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
2 Hb_068576_010 0.16099826 - - hypothetical protein JCGZ_21627 [Jatropha curcas]
3 Hb_002477_100 0.1638579864 - - PREDICTED: protein Brevis radix-like 2 [Jatropha curcas]
4 Hb_023278_030 0.1865558135 - - zinc finger protein, putative [Ricinus communis]
5 Hb_021576_120 0.1874318061 - - DNA-directed RNA polymerase subunit, putative [Ricinus communis]
6 Hb_000005_340 0.1874558813 - - PREDICTED: uncharacterized protein LOC105634028 isoform X1 [Jatropha curcas]
7 Hb_000847_020 0.1893996152 - - PREDICTED: ras-related protein RABA5b [Jatropha curcas]
8 Hb_000094_120 0.1932263006 - - PREDICTED: uncharacterized protein At1g01500 [Jatropha curcas]
9 Hb_001022_050 0.1933137041 - - hypothetical protein POPTR_0016s07780g [Populus trichocarpa]
10 Hb_005539_260 0.1969477283 - - PREDICTED: potassium transporter 6 [Jatropha curcas]
11 Hb_004495_020 0.2010615375 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
12 Hb_127416_010 0.2015758643 - - LysM domain GPI-anchored protein 2 precursor, putative [Ricinus communis]
13 Hb_043987_010 0.2039265078 - - glutathione s-transferase, putative [Ricinus communis]
14 Hb_001433_160 0.2047464223 - - phosphatase 2C family protein [Populus trichocarpa]
15 Hb_000002_350 0.2061824239 transcription factor TF Family: SNF2 DNA repair helicase rad5,16, putative [Ricinus communis]
16 Hb_000094_250 0.2063037126 - - PREDICTED: uncharacterized protein LOC105633774 isoform X3 [Jatropha curcas]
17 Hb_001123_190 0.2078310353 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 15-like [Jatropha curcas]
18 Hb_000913_080 0.2092265564 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 11 [Jatropha curcas]
19 Hb_183086_070 0.2097256585 - - PREDICTED: mitochondrial chaperone BCS1-like [Jatropha curcas]
20 Hb_005545_020 0.2099269859 - - endo beta n-acetylglucosaminidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002597_020 Hb_002597_020 Hb_068576_010 Hb_068576_010 Hb_002597_020--Hb_068576_010 Hb_002477_100 Hb_002477_100 Hb_002597_020--Hb_002477_100 Hb_023278_030 Hb_023278_030 Hb_002597_020--Hb_023278_030 Hb_021576_120 Hb_021576_120 Hb_002597_020--Hb_021576_120 Hb_000005_340 Hb_000005_340 Hb_002597_020--Hb_000005_340 Hb_000847_020 Hb_000847_020 Hb_002597_020--Hb_000847_020 Hb_000094_120 Hb_000094_120 Hb_068576_010--Hb_000094_120 Hb_004656_010 Hb_004656_010 Hb_068576_010--Hb_004656_010 Hb_064985_010 Hb_064985_010 Hb_068576_010--Hb_064985_010 Hb_168068_010 Hb_168068_010 Hb_068576_010--Hb_168068_010 Hb_068576_010--Hb_000847_020 Hb_043987_010 Hb_043987_010 Hb_002477_100--Hb_043987_010 Hb_002030_180 Hb_002030_180 Hb_002477_100--Hb_002030_180 Hb_002477_100--Hb_023278_030 Hb_000020_070 Hb_000020_070 Hb_002477_100--Hb_000020_070 Hb_001318_110 Hb_001318_110 Hb_002477_100--Hb_001318_110 Hb_000002_350 Hb_000002_350 Hb_023278_030--Hb_000002_350 Hb_127416_010 Hb_127416_010 Hb_023278_030--Hb_127416_010 Hb_001022_050 Hb_001022_050 Hb_023278_030--Hb_001022_050 Hb_005545_020 Hb_005545_020 Hb_023278_030--Hb_005545_020 Hb_000529_040 Hb_000529_040 Hb_023278_030--Hb_000529_040 Hb_004920_110 Hb_004920_110 Hb_021576_120--Hb_004920_110 Hb_008747_010 Hb_008747_010 Hb_021576_120--Hb_008747_010 Hb_000254_010 Hb_000254_010 Hb_021576_120--Hb_000254_010 Hb_002909_080 Hb_002909_080 Hb_021576_120--Hb_002909_080 Hb_021576_120--Hb_068576_010 Hb_019863_030 Hb_019863_030 Hb_000005_340--Hb_019863_030 Hb_000024_130 Hb_000024_130 Hb_000005_340--Hb_000024_130 Hb_000005_340--Hb_000847_020 Hb_001433_160 Hb_001433_160 Hb_000005_340--Hb_001433_160 Hb_000007_430 Hb_000007_430 Hb_000005_340--Hb_000007_430 Hb_001287_060 Hb_001287_060 Hb_000005_340--Hb_001287_060 Hb_000527_140 Hb_000527_140 Hb_000847_020--Hb_000527_140 Hb_000847_020--Hb_000024_130 Hb_000847_020--Hb_064985_010 Hb_003142_060 Hb_003142_060 Hb_000847_020--Hb_003142_060 Hb_000527_070 Hb_000527_070 Hb_000847_020--Hb_000527_070 Hb_000847_020--Hb_004656_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.359558 0.440064 0.352242 0.0183302 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0207923 0.0654418 0.217588 0.468325 0.138592

CAGE analysis