Hb_019863_030

Information

Type -
Description -
Location Contig19863: 45775-47469
Sequence    

Annotation

kegg
ID rcu:RCOM_0157010
description hypothetical protein
nr
ID KDP22806.1
description hypothetical protein JCGZ_00393 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JFX5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00393 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19920: 45783-45933 , PASA_asmbl_19921: 46002-46396 , PASA_asmbl_19924: 47778-48527
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019863_030 0.0 - - hypothetical protein JCGZ_00393 [Jatropha curcas]
2 Hb_000007_430 0.1251368915 - - hypothetical protein POPTR_0010s14280g [Populus trichocarpa]
3 Hb_004586_240 0.129571183 - - PREDICTED: serine/threonine-protein kinase-like protein At1g28390 [Jatropha curcas]
4 Hb_005504_030 0.1381705332 - - PREDICTED: somatic embryogenesis receptor kinase 2-like [Pyrus x bretschneideri]
5 Hb_000139_140 0.1411781445 - - Acyl-CoA synthetase [Ricinus communis]
6 Hb_000005_340 0.1431127234 - - PREDICTED: uncharacterized protein LOC105634028 isoform X1 [Jatropha curcas]
7 Hb_172706_020 0.1470939395 - - PREDICTED: protein ABIL2 [Jatropha curcas]
8 Hb_000220_110 0.1527919209 - - fructose-bisphosphate aldolase, putative [Ricinus communis]
9 Hb_001140_360 0.1538812228 - - -
10 Hb_001221_580 0.1539006051 - - PREDICTED: recQ-mediated genome instability protein 1 [Jatropha curcas]
11 Hb_008053_060 0.1560183786 - - PREDICTED: protein PAIR1 isoform X2 [Jatropha curcas]
12 Hb_001195_220 0.1564321463 - - sugar transporter, putative [Ricinus communis]
13 Hb_000732_190 0.159884212 - - structural molecule, putative [Ricinus communis]
14 Hb_001341_200 0.1613337574 transcription factor TF Family: ARF PREDICTED: auxin response factor 4 [Jatropha curcas]
15 Hb_000009_140 0.1647161987 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 1 protein, putative [Ricinus communis]
16 Hb_003227_010 0.1667687044 - - PREDICTED: dynamin-related protein 1E-like [Jatropha curcas]
17 Hb_000984_260 0.1674642599 - - ergosterol biosynthetic protein 28 [Jatropha curcas]
18 Hb_009646_010 0.1697592049 - - PREDICTED: hyoscyamine 6-dioxygenase-like [Jatropha curcas]
19 Hb_000529_040 0.1715618895 - - PREDICTED: uncharacterized protein LOC105641671 [Jatropha curcas]
20 Hb_068492_010 0.1737072976 - - -

Gene co-expression network

sample Hb_019863_030 Hb_019863_030 Hb_000007_430 Hb_000007_430 Hb_019863_030--Hb_000007_430 Hb_004586_240 Hb_004586_240 Hb_019863_030--Hb_004586_240 Hb_005504_030 Hb_005504_030 Hb_019863_030--Hb_005504_030 Hb_000139_140 Hb_000139_140 Hb_019863_030--Hb_000139_140 Hb_000005_340 Hb_000005_340 Hb_019863_030--Hb_000005_340 Hb_172706_020 Hb_172706_020 Hb_019863_030--Hb_172706_020 Hb_000007_430--Hb_000005_340 Hb_000984_260 Hb_000984_260 Hb_000007_430--Hb_000984_260 Hb_000175_470 Hb_000175_470 Hb_000007_430--Hb_000175_470 Hb_001922_060 Hb_001922_060 Hb_000007_430--Hb_001922_060 Hb_000007_430--Hb_172706_020 Hb_004586_240--Hb_005504_030 Hb_000009_140 Hb_000009_140 Hb_004586_240--Hb_000009_140 Hb_001856_170 Hb_001856_170 Hb_004586_240--Hb_001856_170 Hb_000120_310 Hb_000120_310 Hb_004586_240--Hb_000120_310 Hb_001369_160 Hb_001369_160 Hb_004586_240--Hb_001369_160 Hb_001596_020 Hb_001596_020 Hb_004586_240--Hb_001596_020 Hb_005504_030--Hb_000009_140 Hb_033363_010 Hb_033363_010 Hb_005504_030--Hb_033363_010 Hb_000258_090 Hb_000258_090 Hb_005504_030--Hb_000258_090 Hb_000072_020 Hb_000072_020 Hb_005504_030--Hb_000072_020 Hb_010068_070 Hb_010068_070 Hb_005504_030--Hb_010068_070 Hb_000220_110 Hb_000220_110 Hb_000139_140--Hb_000220_110 Hb_003227_010 Hb_003227_010 Hb_000139_140--Hb_003227_010 Hb_001014_190 Hb_001014_190 Hb_000139_140--Hb_001014_190 Hb_004495_020 Hb_004495_020 Hb_000139_140--Hb_004495_020 Hb_000139_140--Hb_000009_140 Hb_009646_010 Hb_009646_010 Hb_000139_140--Hb_009646_010 Hb_000024_130 Hb_000024_130 Hb_000005_340--Hb_000024_130 Hb_000847_020 Hb_000847_020 Hb_000005_340--Hb_000847_020 Hb_001433_160 Hb_001433_160 Hb_000005_340--Hb_001433_160 Hb_001287_060 Hb_001287_060 Hb_000005_340--Hb_001287_060 Hb_000940_210 Hb_000940_210 Hb_172706_020--Hb_000940_210 Hb_023226_030 Hb_023226_030 Hb_172706_020--Hb_023226_030 Hb_002518_090 Hb_002518_090 Hb_172706_020--Hb_002518_090 Hb_034507_060 Hb_034507_060 Hb_172706_020--Hb_034507_060 Hb_004218_130 Hb_004218_130 Hb_172706_020--Hb_004218_130 Hb_000309_030 Hb_000309_030 Hb_172706_020--Hb_000309_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.363493 1.91222 2.42604 2.24146 0.130751 0.197151
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.516109 0.833494 0.241967 3.23664 0.539079

CAGE analysis