Hb_000220_110

Information

Type -
Description -
Location Contig220: 197053-200678
Sequence    

Annotation

kegg
ID rcu:RCOM_0577600
description fructose-bisphosphate aldolase, putative (EC:4.1.2.13)
nr
ID XP_002526308.1
description fructose-bisphosphate aldolase, putative [Ricinus communis]
swissprot
ID Q9ZU52
description Probable fructose-bisphosphate aldolase 3, chloroplastic OS=Arabidopsis thaliana GN=FBA3 PE=1 SV=1
trembl
ID B9SJY9
description Fructose-bisphosphate aldolase OS=Ricinus communis GN=RCOM_0577600 PE=3 SV=1
Gene Ontology
ID GO:0005739
description probable fructose-bisphosphate aldolase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22651: 197057-200630 , PASA_asmbl_22652: 197478-197635
cDNA
(Sanger)
(ID:Location)		 014_L18.ab1: 197188-199423 , 014_N12.ab1: 197195-199370 , 024_G07.ab1: 197137-198613 , 025_I16.ab1: 197195-199399 , 042_A01.ab1: 197057-198664 , 042_M09.ab1: 197104-198873

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000220_110 0.0 - - fructose-bisphosphate aldolase, putative [Ricinus communis]
2 Hb_001616_070 0.0849925592 - - PREDICTED: uncharacterized protein LOC105644365 [Jatropha curcas]
3 Hb_003227_010 0.0859239673 - - PREDICTED: dynamin-related protein 1E-like [Jatropha curcas]
4 Hb_000139_140 0.0910716298 - - Acyl-CoA synthetase [Ricinus communis]
5 Hb_000172_280 0.1007398073 - - aspartate aminotransferase, putative [Ricinus communis]
6 Hb_000683_050 0.108514387 - - PREDICTED: probable carbohydrate esterase At4g34215 [Jatropha curcas]
7 Hb_003683_130 0.1104841069 - - PREDICTED: enolase 1, chloroplastic [Jatropha curcas]
8 Hb_000260_400 0.1138465633 - - PREDICTED: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Jatropha curcas]
9 Hb_004883_020 0.1139879812 - - PREDICTED: uncharacterized protein LOC105647351 [Jatropha curcas]
10 Hb_000309_030 0.1142887172 - - PREDICTED: formate dehydrogenase, mitochondrial [Jatropha curcas]
11 Hb_000009_060 0.1143661326 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B [Jatropha curcas]
12 Hb_018845_010 0.1176495669 - - PREDICTED: uncharacterized protein LOC105642055 [Jatropha curcas]
13 Hb_000907_150 0.1177813012 - - hypothetical protein L484_004295 [Morus notabilis]
14 Hb_172706_020 0.1205510714 - - PREDICTED: protein ABIL2 [Jatropha curcas]
15 Hb_004218_130 0.124858063 - - PREDICTED: uridine 5'-monophosphate synthase [Jatropha curcas]
16 Hb_007416_070 0.1255701633 transcription factor TF Family: B3 hypothetical protein JCGZ_07038 [Jatropha curcas]
17 Hb_000258_090 0.1258367343 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
18 Hb_001004_140 0.1262808979 - - hypothetical protein JCGZ_26893 [Jatropha curcas]
19 Hb_000703_330 0.127019902 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001014_190 0.1275826405 - - PREDICTED: uncharacterized protein LOC105647294 [Jatropha curcas]

Gene co-expression network

sample Hb_000220_110 Hb_000220_110 Hb_001616_070 Hb_001616_070 Hb_000220_110--Hb_001616_070 Hb_003227_010 Hb_003227_010 Hb_000220_110--Hb_003227_010 Hb_000139_140 Hb_000139_140 Hb_000220_110--Hb_000139_140 Hb_000172_280 Hb_000172_280 Hb_000220_110--Hb_000172_280 Hb_000683_050 Hb_000683_050 Hb_000220_110--Hb_000683_050 Hb_003683_130 Hb_003683_130 Hb_000220_110--Hb_003683_130 Hb_000009_060 Hb_000009_060 Hb_001616_070--Hb_000009_060 Hb_001616_070--Hb_003683_130 Hb_000703_330 Hb_000703_330 Hb_001616_070--Hb_000703_330 Hb_000197_190 Hb_000197_190 Hb_001616_070--Hb_000197_190 Hb_007416_070 Hb_007416_070 Hb_001616_070--Hb_007416_070 Hb_010872_040 Hb_010872_040 Hb_003227_010--Hb_010872_040 Hb_003227_010--Hb_000139_140 Hb_000235_050 Hb_000235_050 Hb_003227_010--Hb_000235_050 Hb_005970_010 Hb_005970_010 Hb_003227_010--Hb_005970_010 Hb_002808_020 Hb_002808_020 Hb_003227_010--Hb_002808_020 Hb_001014_190 Hb_001014_190 Hb_000139_140--Hb_001014_190 Hb_004495_020 Hb_004495_020 Hb_000139_140--Hb_004495_020 Hb_000009_140 Hb_000009_140 Hb_000139_140--Hb_000009_140 Hb_009646_010 Hb_009646_010 Hb_000139_140--Hb_009646_010 Hb_002486_080 Hb_002486_080 Hb_000172_280--Hb_002486_080 Hb_124315_010 Hb_124315_010 Hb_000172_280--Hb_124315_010 Hb_000465_150 Hb_000465_150 Hb_000172_280--Hb_000465_150 Hb_000907_150 Hb_000907_150 Hb_000172_280--Hb_000907_150 Hb_001148_090 Hb_001148_090 Hb_000172_280--Hb_001148_090 Hb_000683_050--Hb_007416_070 Hb_000494_030 Hb_000494_030 Hb_000683_050--Hb_000494_030 Hb_004030_060 Hb_004030_060 Hb_000683_050--Hb_004030_060 Hb_001811_170 Hb_001811_170 Hb_000683_050--Hb_001811_170 Hb_010390_010 Hb_010390_010 Hb_000683_050--Hb_010390_010 Hb_005854_040 Hb_005854_040 Hb_000683_050--Hb_005854_040 Hb_000260_400 Hb_000260_400 Hb_003683_130--Hb_000260_400 Hb_000365_200 Hb_000365_200 Hb_003683_130--Hb_000365_200 Hb_004297_090 Hb_004297_090 Hb_003683_130--Hb_004297_090 Hb_022092_010 Hb_022092_010 Hb_003683_130--Hb_022092_010 Hb_003683_130--Hb_000009_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.6705 56.0587 98.6428 135.174 18.2359 15.0213
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.9444 27.9502 22.0739 133.269 54.6897

CAGE analysis