Hb_022092_010

Information

Type -
Description -
Location Contig22092: 2031-4126
Sequence    

Annotation

kegg
ID pop:POPTR_0019s13490g
description hypothetical protein
nr
ID XP_012088339.1
description PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3-like [Jatropha curcas]
swissprot
ID Q6R2K3
description Protein STRUBBELIG-RECEPTOR FAMILY 3 OS=Arabidopsis thaliana GN=SRF3 PE=2 SV=1
trembl
ID U5FJ01
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s13490g PE=4 SV=1
Gene Ontology
ID GO:0016021
description protein strubbelig-receptor family 3 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022092_010 0.0 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3-like [Jatropha curcas]
2 Hb_001689_040 0.0914005984 - - PREDICTED: UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase 1-like [Jatropha curcas]
3 Hb_002392_020 0.0931654615 - - PREDICTED: UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase [Jatropha curcas]
4 Hb_013358_050 0.096357759 - - NADP-dependent glyceraldehyde-3-phosphate dehydrogenase, putative [Ricinus communis]
5 Hb_132101_010 0.0972240686 - - hypothetical protein B456_007G078100 [Gossypium raimondii]
6 Hb_002284_100 0.099498337 - - ribophorin, putative [Ricinus communis]
7 Hb_000365_200 0.100245041 - - PREDICTED: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Jatropha curcas]
8 Hb_007933_040 0.1004679269 - - PREDICTED: probable beta-D-xylosidase 6 isoform X2 [Jatropha curcas]
9 Hb_003683_130 0.1006811254 - - PREDICTED: enolase 1, chloroplastic [Jatropha curcas]
10 Hb_000260_400 0.1016638033 - - PREDICTED: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Jatropha curcas]
11 Hb_001504_060 0.1026505912 - - PREDICTED: nuclear pore complex protein NUP93A-like [Jatropha curcas]
12 Hb_000599_360 0.1040754577 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
13 Hb_031527_080 0.1049087285 - - utp-glucose-1-phosphate uridylyltransferase, putative [Ricinus communis]
14 Hb_006816_230 0.1050097104 - - protein disulfide isomerase, putative [Ricinus communis]
15 Hb_000649_060 0.1055718826 - - PREDICTED: E3 ubiquitin protein ligase RIE1 [Jatropha curcas]
16 Hb_005846_050 0.1099017897 - - PREDICTED: calmodulin-binding transcription activator 3 [Jatropha curcas]
17 Hb_183867_010 0.1101378222 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like [Populus euphratica]
18 Hb_005854_040 0.1112244362 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000101_390 0.1113984878 - - PREDICTED: mucin-5B [Jatropha curcas]
20 Hb_001586_030 0.1115647352 - - aspartyl-tRNA synthetase, putative [Ricinus communis]

Gene co-expression network

sample Hb_022092_010 Hb_022092_010 Hb_001689_040 Hb_001689_040 Hb_022092_010--Hb_001689_040 Hb_002392_020 Hb_002392_020 Hb_022092_010--Hb_002392_020 Hb_013358_050 Hb_013358_050 Hb_022092_010--Hb_013358_050 Hb_132101_010 Hb_132101_010 Hb_022092_010--Hb_132101_010 Hb_002284_100 Hb_002284_100 Hb_022092_010--Hb_002284_100 Hb_000365_200 Hb_000365_200 Hb_022092_010--Hb_000365_200 Hb_011377_040 Hb_011377_040 Hb_001689_040--Hb_011377_040 Hb_001689_040--Hb_002284_100 Hb_015884_020 Hb_015884_020 Hb_001689_040--Hb_015884_020 Hb_010172_010 Hb_010172_010 Hb_001689_040--Hb_010172_010 Hb_000979_130 Hb_000979_130 Hb_001689_040--Hb_000979_130 Hb_003490_060 Hb_003490_060 Hb_002392_020--Hb_003490_060 Hb_000358_210 Hb_000358_210 Hb_002392_020--Hb_000358_210 Hb_001434_020 Hb_001434_020 Hb_002392_020--Hb_001434_020 Hb_007943_150 Hb_007943_150 Hb_002392_020--Hb_007943_150 Hb_002392_020--Hb_002284_100 Hb_002232_490 Hb_002232_490 Hb_002392_020--Hb_002232_490 Hb_004837_280 Hb_004837_280 Hb_013358_050--Hb_004837_280 Hb_183867_010 Hb_183867_010 Hb_013358_050--Hb_183867_010 Hb_013358_050--Hb_132101_010 Hb_001497_060 Hb_001497_060 Hb_013358_050--Hb_001497_060 Hb_000334_260 Hb_000334_260 Hb_013358_050--Hb_000334_260 Hb_132101_010--Hb_183867_010 Hb_000157_070 Hb_000157_070 Hb_132101_010--Hb_000157_070 Hb_132101_010--Hb_004837_280 Hb_002808_020 Hb_002808_020 Hb_132101_010--Hb_002808_020 Hb_002552_040 Hb_002552_040 Hb_002284_100--Hb_002552_040 Hb_002284_100--Hb_000358_210 Hb_011214_110 Hb_011214_110 Hb_002284_100--Hb_011214_110 Hb_005846_050 Hb_005846_050 Hb_002284_100--Hb_005846_050 Hb_019654_020 Hb_019654_020 Hb_002284_100--Hb_019654_020 Hb_003683_130 Hb_003683_130 Hb_000365_200--Hb_003683_130 Hb_004297_090 Hb_004297_090 Hb_000365_200--Hb_004297_090 Hb_000260_400 Hb_000260_400 Hb_000365_200--Hb_000260_400 Hb_001677_100 Hb_001677_100 Hb_000365_200--Hb_001677_100 Hb_006816_230 Hb_006816_230 Hb_000365_200--Hb_006816_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.99383 5.27 11.1103 12.5889 3.78819 4.48723
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.0307 1.85183 5.92303 15.8247 11.8674

CAGE analysis