Hb_132101_010

Information

Type -
Description -
Location Contig132101: 954-1576
Sequence    

Annotation

kegg
ID rcu:RCOM_0853250
description prolyl 4-hydroxylase alpha subunit, putative (EC:1.14.11.2)
nr
ID KJB40816.1
description hypothetical protein B456_007G078100 [Gossypium raimondii]
swissprot
ID Q8L970
description Probable prolyl 4-hydroxylase 7 OS=Arabidopsis thaliana GN=P4H7 PE=2 SV=1
trembl
ID A0A0D2SG08
description Gossypium raimondii chromosome 7, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_007G078100 PE=4 SV=1
Gene Ontology
ID GO:0004656
description probable prolyl 4-hydroxylase 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_132101_010 0.0 - - hypothetical protein B456_007G078100 [Gossypium raimondii]
2 Hb_183867_010 0.0962197989 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like [Populus euphratica]
3 Hb_013358_050 0.0971713155 - - NADP-dependent glyceraldehyde-3-phosphate dehydrogenase, putative [Ricinus communis]
4 Hb_022092_010 0.0972240686 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3-like [Jatropha curcas]
5 Hb_000157_070 0.1055142177 - - PREDICTED: alpha-N-acetylglucosaminidase [Jatropha curcas]
6 Hb_004837_280 0.1101645943 - - PREDICTED: uncharacterized protein LOC105648296 [Jatropha curcas]
7 Hb_002808_020 0.1132304414 - - PREDICTED: uncharacterized protein LOC105630318 isoform X1 [Jatropha curcas]
8 Hb_003683_130 0.1157493338 - - PREDICTED: enolase 1, chloroplastic [Jatropha curcas]
9 Hb_001616_070 0.1157960649 - - PREDICTED: uncharacterized protein LOC105644365 [Jatropha curcas]
10 Hb_002639_030 0.1210291695 - - PREDICTED: prolyl endopeptidase [Jatropha curcas]
11 Hb_003626_050 0.122586891 - - malic enzyme, putative [Ricinus communis]
12 Hb_000649_060 0.1227230272 - - PREDICTED: E3 ubiquitin protein ligase RIE1 [Jatropha curcas]
13 Hb_002631_130 0.1228025312 - - PREDICTED: L-ascorbate oxidase-like [Jatropha curcas]
14 Hb_027760_060 0.1235176491 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
15 Hb_002317_010 0.1251888047 - - PREDICTED: DNA (cytosine-5)-methyltransferase 1-like [Jatropha curcas]
16 Hb_002026_070 0.125962812 - - hypothetical protein PHAVU_002G2910001g, partial [Phaseolus vulgaris]
17 Hb_002392_020 0.1268082715 - - PREDICTED: UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase [Jatropha curcas]
18 Hb_002213_090 0.1268283392 - - PREDICTED: uncharacterized protein LOC105640147 [Jatropha curcas]
19 Hb_004094_020 0.1281994786 - - Pyruvate kinase family protein isoform 1 [Theobroma cacao]
20 Hb_031527_080 0.1282865668 - - utp-glucose-1-phosphate uridylyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_132101_010 Hb_132101_010 Hb_183867_010 Hb_183867_010 Hb_132101_010--Hb_183867_010 Hb_013358_050 Hb_013358_050 Hb_132101_010--Hb_013358_050 Hb_022092_010 Hb_022092_010 Hb_132101_010--Hb_022092_010 Hb_000157_070 Hb_000157_070 Hb_132101_010--Hb_000157_070 Hb_004837_280 Hb_004837_280 Hb_132101_010--Hb_004837_280 Hb_002808_020 Hb_002808_020 Hb_132101_010--Hb_002808_020 Hb_004094_020 Hb_004094_020 Hb_183867_010--Hb_004094_020 Hb_183867_010--Hb_013358_050 Hb_003994_220 Hb_003994_220 Hb_183867_010--Hb_003994_220 Hb_031527_080 Hb_031527_080 Hb_183867_010--Hb_031527_080 Hb_183867_010--Hb_022092_010 Hb_013358_050--Hb_004837_280 Hb_013358_050--Hb_022092_010 Hb_001497_060 Hb_001497_060 Hb_013358_050--Hb_001497_060 Hb_000334_260 Hb_000334_260 Hb_013358_050--Hb_000334_260 Hb_001689_040 Hb_001689_040 Hb_022092_010--Hb_001689_040 Hb_002392_020 Hb_002392_020 Hb_022092_010--Hb_002392_020 Hb_002284_100 Hb_002284_100 Hb_022092_010--Hb_002284_100 Hb_000365_200 Hb_000365_200 Hb_022092_010--Hb_000365_200 Hb_135959_010 Hb_135959_010 Hb_000157_070--Hb_135959_010 Hb_020805_180 Hb_020805_180 Hb_000157_070--Hb_020805_180 Hb_002851_010 Hb_002851_010 Hb_000157_070--Hb_002851_010 Hb_080147_050 Hb_080147_050 Hb_000157_070--Hb_080147_050 Hb_000342_050 Hb_000342_050 Hb_000157_070--Hb_000342_050 Hb_003626_050 Hb_003626_050 Hb_000157_070--Hb_003626_050 Hb_004837_280--Hb_000342_050 Hb_001587_030 Hb_001587_030 Hb_004837_280--Hb_001587_030 Hb_002596_060 Hb_002596_060 Hb_004837_280--Hb_002596_060 Hb_107298_010 Hb_107298_010 Hb_004837_280--Hb_107298_010 Hb_001307_240 Hb_001307_240 Hb_004837_280--Hb_001307_240 Hb_001226_130 Hb_001226_130 Hb_004837_280--Hb_001226_130 Hb_002639_030 Hb_002639_030 Hb_002808_020--Hb_002639_030 Hb_103688_010 Hb_103688_010 Hb_002808_020--Hb_103688_010 Hb_002808_020--Hb_004837_280 Hb_000849_080 Hb_000849_080 Hb_002808_020--Hb_000849_080 Hb_002301_030 Hb_002301_030 Hb_002808_020--Hb_002301_030 Hb_002687_200 Hb_002687_200 Hb_002808_020--Hb_002687_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.30726 9.1433 16.4545 22.6793 4.5908 11.3759
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.51946 3.55086 7.25584 31.556 15.2579

CAGE analysis