Hb_013358_050

Information

Type -
Description -
Location Contig13358: 46670-51646
Sequence    

Annotation

kegg
ID rcu:RCOM_0921710
description NADP-dependent glyceraldehyde-3-phosphate dehydrogenase, putative (EC:1.2.1.9)
nr
ID XP_002515437.1
description NADP-dependent glyceraldehyde-3-phosphate dehydrogenase, putative [Ricinus communis]
swissprot
ID P93338
description NADP-dependent glyceraldehyde-3-phosphate dehydrogenase OS=Nicotiana plumbaginifolia GN=GAPN PE=2 SV=1
trembl
ID B9RNW8
description NADP-dependent glyceraldehyde-3-phosphate dehydrogenase, putative OS=Ricinus communis GN=RCOM_0921710 PE=3 SV=1
Gene Ontology
ID GO:0005737
description nadp-dependent glyceraldehyde-3-phosphate dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09499: 46846-51674
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013358_050 0.0 - - NADP-dependent glyceraldehyde-3-phosphate dehydrogenase, putative [Ricinus communis]
2 Hb_004837_280 0.0929581399 - - PREDICTED: uncharacterized protein LOC105648296 [Jatropha curcas]
3 Hb_183867_010 0.0942310923 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like [Populus euphratica]
4 Hb_022092_010 0.096357759 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3-like [Jatropha curcas]
5 Hb_132101_010 0.0971713155 - - hypothetical protein B456_007G078100 [Gossypium raimondii]
6 Hb_001497_060 0.1045606363 - - PREDICTED: acyl-coenzyme A oxidase 3, peroxisomal-like [Jatropha curcas]
7 Hb_000334_260 0.1047471091 - - carotenoid cleavage dioxygenase 1 [Manihot esculenta]
8 Hb_001900_100 0.1075065964 - - PREDICTED: uncharacterized protein LOC105632664 isoform X1 [Jatropha curcas]
9 Hb_000649_060 0.1090462929 - - PREDICTED: E3 ubiquitin protein ligase RIE1 [Jatropha curcas]
10 Hb_000599_360 0.1093413939 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
11 Hb_031527_080 0.111376397 - - utp-glucose-1-phosphate uridylyltransferase, putative [Ricinus communis]
12 Hb_069619_010 0.1128500659 - - Aspartic proteinase precursor, putative [Ricinus communis]
13 Hb_000101_390 0.1140676906 - - PREDICTED: mucin-5B [Jatropha curcas]
14 Hb_000455_130 0.1152655026 - - PREDICTED: aspartic proteinase A1-like isoform X1 [Jatropha curcas]
15 Hb_002596_060 0.1170123136 - - conserved hypothetical protein [Ricinus communis]
16 Hb_027760_060 0.1183262981 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
17 Hb_001587_030 0.1189215868 - - hypothetical protein JCGZ_09892 [Jatropha curcas]
18 Hb_011925_020 0.1191019168 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
19 Hb_003994_220 0.1194740283 - - PREDICTED: V-type proton ATPase catalytic subunit A [Jatropha curcas]
20 Hb_019840_030 0.1196059739 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_013358_050 Hb_013358_050 Hb_004837_280 Hb_004837_280 Hb_013358_050--Hb_004837_280 Hb_183867_010 Hb_183867_010 Hb_013358_050--Hb_183867_010 Hb_022092_010 Hb_022092_010 Hb_013358_050--Hb_022092_010 Hb_132101_010 Hb_132101_010 Hb_013358_050--Hb_132101_010 Hb_001497_060 Hb_001497_060 Hb_013358_050--Hb_001497_060 Hb_000334_260 Hb_000334_260 Hb_013358_050--Hb_000334_260 Hb_000342_050 Hb_000342_050 Hb_004837_280--Hb_000342_050 Hb_001587_030 Hb_001587_030 Hb_004837_280--Hb_001587_030 Hb_002596_060 Hb_002596_060 Hb_004837_280--Hb_002596_060 Hb_107298_010 Hb_107298_010 Hb_004837_280--Hb_107298_010 Hb_001307_240 Hb_001307_240 Hb_004837_280--Hb_001307_240 Hb_001226_130 Hb_001226_130 Hb_004837_280--Hb_001226_130 Hb_004094_020 Hb_004094_020 Hb_183867_010--Hb_004094_020 Hb_183867_010--Hb_132101_010 Hb_003994_220 Hb_003994_220 Hb_183867_010--Hb_003994_220 Hb_031527_080 Hb_031527_080 Hb_183867_010--Hb_031527_080 Hb_183867_010--Hb_022092_010 Hb_001689_040 Hb_001689_040 Hb_022092_010--Hb_001689_040 Hb_002392_020 Hb_002392_020 Hb_022092_010--Hb_002392_020 Hb_022092_010--Hb_132101_010 Hb_002284_100 Hb_002284_100 Hb_022092_010--Hb_002284_100 Hb_000365_200 Hb_000365_200 Hb_022092_010--Hb_000365_200 Hb_000157_070 Hb_000157_070 Hb_132101_010--Hb_000157_070 Hb_132101_010--Hb_004837_280 Hb_002808_020 Hb_002808_020 Hb_132101_010--Hb_002808_020 Hb_001497_060--Hb_000334_260 Hb_075315_010 Hb_075315_010 Hb_001497_060--Hb_075315_010 Hb_000723_010 Hb_000723_010 Hb_001497_060--Hb_000723_010 Hb_001160_070 Hb_001160_070 Hb_001497_060--Hb_001160_070 Hb_001497_060--Hb_004837_280 Hb_002995_040 Hb_002995_040 Hb_000334_260--Hb_002995_040 Hb_000334_260--Hb_001160_070 Hb_007747_170 Hb_007747_170 Hb_000334_260--Hb_007747_170 Hb_000334_260--Hb_001307_240 Hb_002874_090 Hb_002874_090 Hb_000334_260--Hb_002874_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.6038 17.412 23.1818 31.5243 7.99165 12.534
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.5159 2.76413 13.2851 41.5882 21.8785

CAGE analysis