Hb_002874_090

Information

Type -
Description -
Location Contig2874: 60052-66167
Sequence    

Annotation

kegg
ID rcu:RCOM_0205120
description hypothetical protein
nr
ID XP_012076306.1
description PREDICTED: uncharacterized protein LOC105637452 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KB25
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06997 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29982: 60074-66152 , PASA_asmbl_29983: 60074-66193 , PASA_asmbl_29984: 65328-65460
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002874_090 0.0 - - PREDICTED: uncharacterized protein LOC105637452 [Jatropha curcas]
2 Hb_002045_250 0.0863235524 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP63 isoform X3 [Jatropha curcas]
3 Hb_092000_010 0.0867378333 - - kelch repeat-containing F-box family protein [Populus trichocarpa]
4 Hb_004544_040 0.0919208767 - - hypothetical protein PHAVU_010G103000g [Phaseolus vulgaris]
5 Hb_007062_030 0.0940413495 - - hypothetical protein VITISV_039033 [Vitis vinifera]
6 Hb_001552_030 0.0945631338 - - PREDICTED: galactoside 2-alpha-L-fucosyltransferase-like isoform X1 [Jatropha curcas]
7 Hb_000017_230 0.0958381589 - - hypothetical protein JCGZ_20558 [Jatropha curcas]
8 Hb_000069_480 0.0958643329 - - conserved hypothetical protein [Ricinus communis]
9 Hb_015026_130 0.0959977862 - - quinone oxidoreductase, putative [Ricinus communis]
10 Hb_006502_030 0.0981293521 - - PREDICTED: probable kinetochore protein ndc80 [Jatropha curcas]
11 Hb_000334_260 0.0992939665 - - carotenoid cleavage dioxygenase 1 [Manihot esculenta]
12 Hb_001584_350 0.1006634003 - - hypothetical protein JCGZ_23178 [Jatropha curcas]
13 Hb_002995_040 0.1010874099 - - PREDICTED: probable serine/threonine-protein kinase dyrk1 isoform X1 [Jatropha curcas]
14 Hb_012092_060 0.1020760963 - - PREDICTED: KH domain-containing protein At4g18375 [Jatropha curcas]
15 Hb_003363_080 0.1030246885 - - eukaryotic translation elongation factor 1B gamma-subunit [Hevea brasiliensis]
16 Hb_000588_080 0.1033153205 - - PREDICTED: uncharacterized protein LOC105638459 [Jatropha curcas]
17 Hb_008103_020 0.104209149 - - hypothetical protein POPTR_0003s20310g [Populus trichocarpa]
18 Hb_000197_030 0.1045165935 - - hypothetical protein RCOM_1447500 [Ricinus communis]
19 Hb_004109_370 0.1047067842 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
20 Hb_004204_130 0.1049005597 - - PREDICTED: uncharacterized protein LOC103930912 [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_002874_090 Hb_002874_090 Hb_002045_250 Hb_002045_250 Hb_002874_090--Hb_002045_250 Hb_092000_010 Hb_092000_010 Hb_002874_090--Hb_092000_010 Hb_004544_040 Hb_004544_040 Hb_002874_090--Hb_004544_040 Hb_007062_030 Hb_007062_030 Hb_002874_090--Hb_007062_030 Hb_001552_030 Hb_001552_030 Hb_002874_090--Hb_001552_030 Hb_000017_230 Hb_000017_230 Hb_002874_090--Hb_000017_230 Hb_002092_070 Hb_002092_070 Hb_002045_250--Hb_002092_070 Hb_004429_010 Hb_004429_010 Hb_002045_250--Hb_004429_010 Hb_001723_140 Hb_001723_140 Hb_002045_250--Hb_001723_140 Hb_009252_050 Hb_009252_050 Hb_002045_250--Hb_009252_050 Hb_000046_600 Hb_000046_600 Hb_002045_250--Hb_000046_600 Hb_000529_060 Hb_000529_060 Hb_002045_250--Hb_000529_060 Hb_092000_010--Hb_000017_230 Hb_092000_010--Hb_002045_250 Hb_001935_160 Hb_001935_160 Hb_092000_010--Hb_001935_160 Hb_001085_290 Hb_001085_290 Hb_092000_010--Hb_001085_290 Hb_000088_050 Hb_000088_050 Hb_092000_010--Hb_000088_050 Hb_085742_010 Hb_085742_010 Hb_092000_010--Hb_085742_010 Hb_016461_020 Hb_016461_020 Hb_004544_040--Hb_016461_020 Hb_007955_050 Hb_007955_050 Hb_004544_040--Hb_007955_050 Hb_001408_110 Hb_001408_110 Hb_004544_040--Hb_001408_110 Hb_001558_040 Hb_001558_040 Hb_004544_040--Hb_001558_040 Hb_001307_240 Hb_001307_240 Hb_004544_040--Hb_001307_240 Hb_005765_010 Hb_005765_010 Hb_007062_030--Hb_005765_010 Hb_002492_010 Hb_002492_010 Hb_007062_030--Hb_002492_010 Hb_003363_080 Hb_003363_080 Hb_007062_030--Hb_003363_080 Hb_001946_340 Hb_001946_340 Hb_007062_030--Hb_001946_340 Hb_012092_060 Hb_012092_060 Hb_007062_030--Hb_012092_060 Hb_000170_090 Hb_000170_090 Hb_007062_030--Hb_000170_090 Hb_001552_030--Hb_000017_230 Hb_001488_220 Hb_001488_220 Hb_001552_030--Hb_001488_220 Hb_001552_030--Hb_001085_290 Hb_004109_370 Hb_004109_370 Hb_001552_030--Hb_004109_370 Hb_002784_030 Hb_002784_030 Hb_001552_030--Hb_002784_030 Hb_121089_030 Hb_121089_030 Hb_001552_030--Hb_121089_030 Hb_000017_230--Hb_121089_030 Hb_021165_010 Hb_021165_010 Hb_000017_230--Hb_021165_010 Hb_000017_230--Hb_001085_290 Hb_000017_230--Hb_000088_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
38.6831 58.974 39.8853 61.9229 19.5525 51.7716
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.6102 15.5097 15.8525 52.004 31.3734

CAGE analysis