Hb_007062_030

Information

Type -
Description -
Location Contig7062: 54545-56684
Sequence    

Annotation

kegg
ID mdm:103414358
description ADP-ribosylation factor GTPase-activating protein AGD4-like
nr
ID CAN83789.1
description hypothetical protein VITISV_039033 [Vitis vinifera]
swissprot
ID Q6ZQK5
description Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 OS=Mus musculus GN=Acap2 PE=1 SV=2
trembl
ID A5C0F3
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_039033 PE=4 SV=1
Gene Ontology
ID GO:0005737
description adp-ribosylation factor gtpase-activating protein agd4-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55113: 18425-54671 , PASA_asmbl_55115: 54232-54398
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007062_030 0.0 - - hypothetical protein VITISV_039033 [Vitis vinifera]
2 Hb_005765_010 0.0631187001 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 isoform X1 [Jatropha curcas]
3 Hb_002492_010 0.0635822955 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 2-like [Populus euphratica]
4 Hb_003363_080 0.0648220912 - - eukaryotic translation elongation factor 1B gamma-subunit [Hevea brasiliensis]
5 Hb_001946_340 0.0721668349 - - PREDICTED: mediator of RNA polymerase II transcription subunit 17-like isoform X1 [Jatropha curcas]
6 Hb_012092_060 0.0729132505 - - PREDICTED: KH domain-containing protein At4g18375 [Jatropha curcas]
7 Hb_000170_090 0.0748882993 - - PREDICTED: UDP-sugar pyrophosphorylase [Jatropha curcas]
8 Hb_000981_030 0.0753192832 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105640649 [Jatropha curcas]
9 Hb_001716_020 0.0764931662 - - hydrolase, putative [Ricinus communis]
10 Hb_000046_570 0.0767817593 - - hypothetical protein JCGZ_01998 [Jatropha curcas]
11 Hb_004128_130 0.0770895278 - - PREDICTED: protein MODIFIER OF SNC1 11 isoform X1 [Jatropha curcas]
12 Hb_001481_060 0.0775155583 - - PREDICTED: E3 ubiquitin-protein ligase HOS1 isoform X1 [Jatropha curcas]
13 Hb_184798_080 0.0777372486 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-related [Jatropha curcas]
14 Hb_021374_010 0.0783724763 transcription factor TF Family: NAC PREDICTED: NAC transcription factor NAM-A1 [Populus euphratica]
15 Hb_001377_310 0.0786485861 transcription factor TF Family: Coactivator p15 PREDICTED: uncharacterized protein LOC105642839 [Jatropha curcas]
16 Hb_004586_060 0.0790378898 - - PREDICTED: AP-4 complex subunit mu [Jatropha curcas]
17 Hb_004143_100 0.0791531029 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000089_180 0.0792803261 - - PREDICTED: homoserine kinase-like [Jatropha curcas]
19 Hb_005460_050 0.0803763595 - - COR413-PM2, putative [Ricinus communis]
20 Hb_105328_020 0.080545236 - - PREDICTED: phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [Jatropha curcas]

Gene co-expression network

sample Hb_007062_030 Hb_007062_030 Hb_005765_010 Hb_005765_010 Hb_007062_030--Hb_005765_010 Hb_002492_010 Hb_002492_010 Hb_007062_030--Hb_002492_010 Hb_003363_080 Hb_003363_080 Hb_007062_030--Hb_003363_080 Hb_001946_340 Hb_001946_340 Hb_007062_030--Hb_001946_340 Hb_012092_060 Hb_012092_060 Hb_007062_030--Hb_012092_060 Hb_000170_090 Hb_000170_090 Hb_007062_030--Hb_000170_090 Hb_000083_120 Hb_000083_120 Hb_005765_010--Hb_000083_120 Hb_005765_010--Hb_003363_080 Hb_105328_020 Hb_105328_020 Hb_005765_010--Hb_105328_020 Hb_001500_140 Hb_001500_140 Hb_005765_010--Hb_001500_140 Hb_000981_030 Hb_000981_030 Hb_005765_010--Hb_000981_030 Hb_001716_020 Hb_001716_020 Hb_002492_010--Hb_001716_020 Hb_001481_060 Hb_001481_060 Hb_002492_010--Hb_001481_060 Hb_000087_060 Hb_000087_060 Hb_002492_010--Hb_000087_060 Hb_004994_240 Hb_004994_240 Hb_002492_010--Hb_004994_240 Hb_001089_050 Hb_001089_050 Hb_002492_010--Hb_001089_050 Hb_004143_100 Hb_004143_100 Hb_002492_010--Hb_004143_100 Hb_003363_080--Hb_000170_090 Hb_001377_310 Hb_001377_310 Hb_003363_080--Hb_001377_310 Hb_003177_020 Hb_003177_020 Hb_003363_080--Hb_003177_020 Hb_003363_080--Hb_000981_030 Hb_003943_010 Hb_003943_010 Hb_001946_340--Hb_003943_010 Hb_007123_030 Hb_007123_030 Hb_001946_340--Hb_007123_030 Hb_007747_040 Hb_007747_040 Hb_001946_340--Hb_007747_040 Hb_004935_030 Hb_004935_030 Hb_001946_340--Hb_004935_030 Hb_001767_140 Hb_001767_140 Hb_001946_340--Hb_001767_140 Hb_001377_160 Hb_001377_160 Hb_001946_340--Hb_001377_160 Hb_003912_070 Hb_003912_070 Hb_012092_060--Hb_003912_070 Hb_000537_050 Hb_000537_050 Hb_012092_060--Hb_000537_050 Hb_005568_040 Hb_005568_040 Hb_012092_060--Hb_005568_040 Hb_012286_040 Hb_012286_040 Hb_012092_060--Hb_012286_040 Hb_000003_100 Hb_000003_100 Hb_012092_060--Hb_000003_100 Hb_011287_050 Hb_011287_050 Hb_012092_060--Hb_011287_050 Hb_000170_090--Hb_105328_020 Hb_000170_090--Hb_001377_310 Hb_004586_220 Hb_004586_220 Hb_000170_090--Hb_004586_220 Hb_013399_020 Hb_013399_020 Hb_000170_090--Hb_013399_020 Hb_000976_140 Hb_000976_140 Hb_000170_090--Hb_000976_140 Hb_000345_160 Hb_000345_160 Hb_000170_090--Hb_000345_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.20736 8.19975 6.49524 8.52362 3.89337 8.16734
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.22796 4.36342 4.89327 7.29184 5.32644

CAGE analysis