Hb_001408_110

Information

Type -
Description -
Location Contig1408: 93069-98981
Sequence    

Annotation

kegg
ID rcu:RCOM_0759490
description bromodomain-containing protein, putative
nr
ID KCW57117.1
description hypothetical protein EUGRSUZ_I02762 [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID A0A059AT34
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I02762 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11043: 93084-99133 , PASA_asmbl_11044: 96637-99133
cDNA
(Sanger)
(ID:Location)		 025_K21.ab1: 97851-99133

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001408_110 0.0 - - hypothetical protein EUGRSUZ_I02762 [Eucalyptus grandis]
2 Hb_024650_080 0.058391544 - - PREDICTED: BTB/POZ domain-containing protein At3g09030 [Jatropha curcas]
3 Hb_000089_180 0.0609543131 - - PREDICTED: homoserine kinase-like [Jatropha curcas]
4 Hb_004037_020 0.0692008041 - - PREDICTED: uncharacterized protein LOC105632366 isoform X1 [Jatropha curcas]
5 Hb_007839_020 0.0707568623 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001241_010 0.072091316 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_010407_080 0.0760103764 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT35 isoform X1 [Jatropha curcas]
8 Hb_003912_040 0.0760136444 - - hypothetical protein CISIN_1g005153mg [Citrus sinensis]
9 Hb_000373_170 0.0770322707 - - PREDICTED: exocyst complex component SEC5A-like [Jatropha curcas]
10 Hb_016172_030 0.0772788559 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Jatropha curcas]
11 Hb_001329_200 0.0779317016 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 1 [Jatropha curcas]
12 Hb_011360_050 0.0781994948 - - PREDICTED: BAG family molecular chaperone regulator 8, chloroplastic [Jatropha curcas]
13 Hb_000008_240 0.0783797047 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001776_020 0.079096259 - - Protein kinase capable of phosphorylating tyrosine family protein [Populus trichocarpa]
15 Hb_000189_600 0.07973107 - - PREDICTED: protein MON2 homolog isoform X1 [Jatropha curcas]
16 Hb_001481_060 0.0797527478 - - PREDICTED: E3 ubiquitin-protein ligase HOS1 isoform X1 [Jatropha curcas]
17 Hb_000521_330 0.079761751 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004143_100 0.0809337556 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004333_040 0.0810107508 - - PREDICTED: uncharacterized protein LOC105629988 [Jatropha curcas]
20 Hb_000069_480 0.081157696 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001408_110 Hb_001408_110 Hb_024650_080 Hb_024650_080 Hb_001408_110--Hb_024650_080 Hb_000089_180 Hb_000089_180 Hb_001408_110--Hb_000089_180 Hb_004037_020 Hb_004037_020 Hb_001408_110--Hb_004037_020 Hb_007839_020 Hb_007839_020 Hb_001408_110--Hb_007839_020 Hb_001241_010 Hb_001241_010 Hb_001408_110--Hb_001241_010 Hb_010407_080 Hb_010407_080 Hb_001408_110--Hb_010407_080 Hb_016172_030 Hb_016172_030 Hb_024650_080--Hb_016172_030 Hb_022425_030 Hb_022425_030 Hb_024650_080--Hb_022425_030 Hb_000103_290 Hb_000103_290 Hb_024650_080--Hb_000103_290 Hb_000926_150 Hb_000926_150 Hb_024650_080--Hb_000926_150 Hb_000020_160 Hb_000020_160 Hb_024650_080--Hb_000020_160 Hb_004128_130 Hb_004128_130 Hb_000089_180--Hb_004128_130 Hb_015026_130 Hb_015026_130 Hb_000089_180--Hb_015026_130 Hb_000085_450 Hb_000085_450 Hb_000089_180--Hb_000085_450 Hb_004143_100 Hb_004143_100 Hb_000089_180--Hb_004143_100 Hb_000089_180--Hb_004037_020 Hb_004037_020--Hb_016172_030 Hb_000345_160 Hb_000345_160 Hb_004037_020--Hb_000345_160 Hb_001481_060 Hb_001481_060 Hb_004037_020--Hb_001481_060 Hb_086063_020 Hb_086063_020 Hb_004037_020--Hb_086063_020 Hb_000317_100 Hb_000317_100 Hb_004037_020--Hb_000317_100 Hb_004705_170 Hb_004705_170 Hb_004037_020--Hb_004705_170 Hb_007839_020--Hb_010407_080 Hb_011360_050 Hb_011360_050 Hb_007839_020--Hb_011360_050 Hb_001329_200 Hb_001329_200 Hb_007839_020--Hb_001329_200 Hb_001328_080 Hb_001328_080 Hb_007839_020--Hb_001328_080 Hb_022425_060 Hb_022425_060 Hb_007839_020--Hb_022425_060 Hb_004333_040 Hb_004333_040 Hb_001241_010--Hb_004333_040 Hb_000189_600 Hb_000189_600 Hb_001241_010--Hb_000189_600 Hb_000215_300 Hb_000215_300 Hb_001241_010--Hb_000215_300 Hb_183433_010 Hb_183433_010 Hb_001241_010--Hb_183433_010 Hb_000116_030 Hb_000116_030 Hb_001241_010--Hb_000116_030 Hb_002686_230 Hb_002686_230 Hb_010407_080--Hb_002686_230 Hb_010407_080--Hb_022425_060 Hb_001269_380 Hb_001269_380 Hb_010407_080--Hb_001269_380 Hb_010407_080--Hb_001329_200 Hb_033312_130 Hb_033312_130 Hb_010407_080--Hb_033312_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.1872 25.6809 18.7289 22.1594 9.35411 12.9529
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.388 11.4573 7.2539 18.1831 16.6924

CAGE analysis