Hb_002808_020

Information

Type -
Description -
Location Contig2808: 19721-32387
Sequence    

Annotation

kegg
ID rcu:RCOM_0470850
description hypothetical protein
nr
ID XP_012067505.1
description PREDICTED: uncharacterized protein LOC105630318 isoform X1 [Jatropha curcas]
swissprot
ID Q6TRW4
description Sister chromatid cohesion protein PDS5 homolog B OS=Rattus norvegicus GN=Pds5b PE=2 SV=2
trembl
ID A0A067L406
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26996 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002808_020 0.0 - - PREDICTED: uncharacterized protein LOC105630318 isoform X1 [Jatropha curcas]
2 Hb_002639_030 0.0725883422 - - PREDICTED: prolyl endopeptidase [Jatropha curcas]
3 Hb_103688_010 0.0873406475 - - PREDICTED: sucrose-phosphatase 2-like [Jatropha curcas]
4 Hb_004837_280 0.0958667784 - - PREDICTED: uncharacterized protein LOC105648296 [Jatropha curcas]
5 Hb_000849_080 0.0969393061 - - PREDICTED: monocopper oxidase-like protein SKU5 isoform X1 [Jatropha curcas]
6 Hb_002301_030 0.0979974269 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
7 Hb_002687_200 0.1035376092 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000157_070 0.1054329521 - - PREDICTED: alpha-N-acetylglucosaminidase [Jatropha curcas]
9 Hb_001307_240 0.1072412264 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR2 isoform X2 [Jatropha curcas]
10 Hb_002007_260 0.1073175307 - - beta-mannosidase, putative [Ricinus communis]
11 Hb_001018_060 0.1073499097 - - hypothetical protein B456_001G028000 [Gossypium raimondii]
12 Hb_002740_090 0.1077620362 - - PREDICTED: putative membrane-bound O-acyltransferase C24H6.01c [Jatropha curcas]
13 Hb_158845_060 0.1088076996 - - PREDICTED: nudix hydrolase 3 isoform X1 [Jatropha curcas]
14 Hb_001226_130 0.1090653146 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
15 Hb_002392_020 0.1107021628 - - PREDICTED: UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase [Jatropha curcas]
16 Hb_001558_040 0.1109836859 - - PREDICTED: GPI ethanolamine phosphate transferase 2 [Jatropha curcas]
17 Hb_000703_330 0.1111096922 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000342_050 0.1116648242 - - hypothetical protein POPTR_0006s24710g [Populus trichocarpa]
19 Hb_001085_070 0.1122800414 - - PREDICTED: UBX domain-containing protein 4 [Vitis vinifera]
20 Hb_005854_040 0.1123383736 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002808_020 Hb_002808_020 Hb_002639_030 Hb_002639_030 Hb_002808_020--Hb_002639_030 Hb_103688_010 Hb_103688_010 Hb_002808_020--Hb_103688_010 Hb_004837_280 Hb_004837_280 Hb_002808_020--Hb_004837_280 Hb_000849_080 Hb_000849_080 Hb_002808_020--Hb_000849_080 Hb_002301_030 Hb_002301_030 Hb_002808_020--Hb_002301_030 Hb_002687_200 Hb_002687_200 Hb_002808_020--Hb_002687_200 Hb_002639_030--Hb_004837_280 Hb_000703_330 Hb_000703_330 Hb_002639_030--Hb_000703_330 Hb_002639_030--Hb_002687_200 Hb_001226_130 Hb_001226_130 Hb_002639_030--Hb_001226_130 Hb_002552_040 Hb_002552_040 Hb_002639_030--Hb_002552_040 Hb_103688_010--Hb_000849_080 Hb_135959_010 Hb_135959_010 Hb_103688_010--Hb_135959_010 Hb_002007_260 Hb_002007_260 Hb_103688_010--Hb_002007_260 Hb_001558_040 Hb_001558_040 Hb_103688_010--Hb_001558_040 Hb_000157_070 Hb_000157_070 Hb_103688_010--Hb_000157_070 Hb_000342_050 Hb_000342_050 Hb_004837_280--Hb_000342_050 Hb_001587_030 Hb_001587_030 Hb_004837_280--Hb_001587_030 Hb_002596_060 Hb_002596_060 Hb_004837_280--Hb_002596_060 Hb_107298_010 Hb_107298_010 Hb_004837_280--Hb_107298_010 Hb_001307_240 Hb_001307_240 Hb_004837_280--Hb_001307_240 Hb_004837_280--Hb_001226_130 Hb_000140_450 Hb_000140_450 Hb_000849_080--Hb_000140_450 Hb_000849_080--Hb_002007_260 Hb_000575_100 Hb_000575_100 Hb_000849_080--Hb_000575_100 Hb_024570_040 Hb_024570_040 Hb_000849_080--Hb_024570_040 Hb_000510_150 Hb_000510_150 Hb_002301_030--Hb_000510_150 Hb_001246_130 Hb_001246_130 Hb_002301_030--Hb_001246_130 Hb_002301_030--Hb_002687_200 Hb_000027_200 Hb_000027_200 Hb_002301_030--Hb_000027_200 Hb_000665_170 Hb_000665_170 Hb_002301_030--Hb_000665_170 Hb_003680_220 Hb_003680_220 Hb_002687_200--Hb_003680_220 Hb_015884_020 Hb_015884_020 Hb_002687_200--Hb_015884_020 Hb_000007_090 Hb_000007_090 Hb_002687_200--Hb_000007_090 Hb_002687_200--Hb_000027_200 Hb_002687_200--Hb_002552_040 Hb_002942_230 Hb_002942_230 Hb_002687_200--Hb_002942_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.919961 1.64089 2.95004 3.92342 0.928794 1.56751
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.08872 0.599607 0.444471 3.66141 2.38556

CAGE analysis