Hb_183867_010

Information

Type -
Description -
Location Contig183867: 2502-3311
Sequence    

Annotation

kegg
ID pop:POPTR_0013s14640g
description POPTRDRAFT_571830; hypothetical protein
nr
ID XP_011048496.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like [Populus euphratica]
swissprot
ID P0C7Q7
description Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1
trembl
ID B9I6I7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s14640g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_183867_010 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like [Populus euphratica]
2 Hb_004094_020 0.0823959876 - - Pyruvate kinase family protein isoform 1 [Theobroma cacao]
3 Hb_013358_050 0.0942310923 - - NADP-dependent glyceraldehyde-3-phosphate dehydrogenase, putative [Ricinus communis]
4 Hb_132101_010 0.0962197989 - - hypothetical protein B456_007G078100 [Gossypium raimondii]
5 Hb_003994_220 0.108413564 - - PREDICTED: V-type proton ATPase catalytic subunit A [Jatropha curcas]
6 Hb_031527_080 0.1089580439 - - utp-glucose-1-phosphate uridylyltransferase, putative [Ricinus communis]
7 Hb_022092_010 0.1101378222 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3-like [Jatropha curcas]
8 Hb_000494_030 0.1102047891 - - PREDICTED: uncharacterized protein LOC105643196 [Jatropha curcas]
9 Hb_000152_700 0.1105567781 - - PREDICTED: E3 ubiquitin protein ligase RIN2 [Jatropha curcas]
10 Hb_000649_060 0.111802892 - - PREDICTED: E3 ubiquitin protein ligase RIE1 [Jatropha curcas]
11 Hb_000683_050 0.1124087196 - - PREDICTED: probable carbohydrate esterase At4g34215 [Jatropha curcas]
12 Hb_004837_280 0.112900071 - - PREDICTED: uncharacterized protein LOC105648296 [Jatropha curcas]
13 Hb_001497_060 0.1137925864 - - PREDICTED: acyl-coenzyme A oxidase 3, peroxisomal-like [Jatropha curcas]
14 Hb_069619_010 0.1160851962 - - Aspartic proteinase precursor, putative [Ricinus communis]
15 Hb_001642_070 0.1176297076 - - PREDICTED: uncharacterized protein LOC105646431 [Jatropha curcas]
16 Hb_004450_070 0.1181640586 - - PREDICTED: 2-hydroxyacyl-CoA lyase [Jatropha curcas]
17 Hb_001900_100 0.1201068392 - - PREDICTED: uncharacterized protein LOC105632664 isoform X1 [Jatropha curcas]
18 Hb_003340_010 0.1209226627 - - PREDICTED: ubiquitin-activating enzyme E1 1 [Vitis vinifera]
19 Hb_002631_130 0.120949096 - - PREDICTED: L-ascorbate oxidase-like [Jatropha curcas]
20 Hb_002301_030 0.1225279791 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]

Gene co-expression network

sample Hb_183867_010 Hb_183867_010 Hb_004094_020 Hb_004094_020 Hb_183867_010--Hb_004094_020 Hb_013358_050 Hb_013358_050 Hb_183867_010--Hb_013358_050 Hb_132101_010 Hb_132101_010 Hb_183867_010--Hb_132101_010 Hb_003994_220 Hb_003994_220 Hb_183867_010--Hb_003994_220 Hb_031527_080 Hb_031527_080 Hb_183867_010--Hb_031527_080 Hb_022092_010 Hb_022092_010 Hb_183867_010--Hb_022092_010 Hb_135757_020 Hb_135757_020 Hb_004094_020--Hb_135757_020 Hb_005914_140 Hb_005914_140 Hb_004094_020--Hb_005914_140 Hb_000494_030 Hb_000494_030 Hb_004094_020--Hb_000494_030 Hb_001006_270 Hb_001006_270 Hb_004094_020--Hb_001006_270 Hb_004094_020--Hb_003994_220 Hb_004837_280 Hb_004837_280 Hb_013358_050--Hb_004837_280 Hb_013358_050--Hb_022092_010 Hb_013358_050--Hb_132101_010 Hb_001497_060 Hb_001497_060 Hb_013358_050--Hb_001497_060 Hb_000334_260 Hb_000334_260 Hb_013358_050--Hb_000334_260 Hb_132101_010--Hb_022092_010 Hb_000157_070 Hb_000157_070 Hb_132101_010--Hb_000157_070 Hb_132101_010--Hb_004837_280 Hb_002808_020 Hb_002808_020 Hb_132101_010--Hb_002808_020 Hb_003038_040 Hb_003038_040 Hb_003994_220--Hb_003038_040 Hb_001703_050 Hb_001703_050 Hb_003994_220--Hb_001703_050 Hb_003994_220--Hb_031527_080 Hb_003097_140 Hb_003097_140 Hb_003994_220--Hb_003097_140 Hb_007416_210 Hb_007416_210 Hb_003994_220--Hb_007416_210 Hb_001021_010 Hb_001021_010 Hb_003994_220--Hb_001021_010 Hb_031527_080--Hb_003038_040 Hb_031527_080--Hb_001021_010 Hb_000009_060 Hb_000009_060 Hb_031527_080--Hb_000009_060 Hb_001097_040 Hb_001097_040 Hb_031527_080--Hb_001097_040 Hb_002686_200 Hb_002686_200 Hb_031527_080--Hb_002686_200 Hb_001689_040 Hb_001689_040 Hb_022092_010--Hb_001689_040 Hb_002392_020 Hb_002392_020 Hb_022092_010--Hb_002392_020 Hb_002284_100 Hb_002284_100 Hb_022092_010--Hb_002284_100 Hb_000365_200 Hb_000365_200 Hb_022092_010--Hb_000365_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.59906 6.57901 7.79015 17.2693 2.45067 6.32485
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.05372 2.92317 6.42804 18.4583 9.96672

CAGE analysis