Hb_001689_040

Information

Type -
Description -
Location Contig1689: 90177-92052
Sequence    

Annotation

kegg
ID rcu:RCOM_1593820
description hypothetical protein
nr
ID XP_012071801.1
description PREDICTED: UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase 1-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KQH8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04401 PE=4 SV=1
Gene Ontology
ID GO:0016740
description udp-d-xylose:l-fucose alpha- -d-xylosyltransferase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15661: 90844-91803
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001689_040 0.0 - - PREDICTED: UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase 1-like [Jatropha curcas]
2 Hb_011377_040 0.0885903734 - - PREDICTED: uncharacterized protein LOC105647286 [Jatropha curcas]
3 Hb_022092_010 0.0914005984 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3-like [Jatropha curcas]
4 Hb_002284_100 0.102847686 - - ribophorin, putative [Ricinus communis]
5 Hb_015884_020 0.1076532066 - - PREDICTED: protein PIR [Jatropha curcas]
6 Hb_010172_010 0.107926361 - - PREDICTED: probable beta-1,3-galactosyltransferase 20 [Jatropha curcas]
7 Hb_000979_130 0.1082660661 - - PREDICTED: phosphoglucomutase, cytoplasmic [Jatropha curcas]
8 Hb_005694_060 0.1149020576 - - PREDICTED: bifunctional fucokinase/fucose pyrophosphorylase [Jatropha curcas]
9 Hb_019654_020 0.1152746792 - - PREDICTED: T-complex protein 1 subunit beta [Jatropha curcas]
10 Hb_006970_020 0.1155513731 - - PREDICTED: DNA topoisomerase 6 subunit B [Jatropha curcas]
11 Hb_005846_050 0.1197791662 - - PREDICTED: calmodulin-binding transcription activator 3 [Jatropha curcas]
12 Hb_002392_020 0.1211591234 - - PREDICTED: UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase [Jatropha curcas]
13 Hb_002552_040 0.1216560071 - - PREDICTED: uncharacterized protein LOC105641220 [Jatropha curcas]
14 Hb_000358_210 0.1227085621 - - oligosaccharyl transferase, putative [Ricinus communis]
15 Hb_001504_060 0.1240409937 - - PREDICTED: nuclear pore complex protein NUP93A-like [Jatropha curcas]
16 Hb_007933_040 0.1259680781 - - PREDICTED: probable beta-D-xylosidase 6 isoform X2 [Jatropha curcas]
17 Hb_007416_210 0.1272213092 - - PREDICTED: coatomer subunit beta-1 [Jatropha curcas]
18 Hb_003994_220 0.1280471445 - - PREDICTED: V-type proton ATPase catalytic subunit A [Jatropha curcas]
19 Hb_000853_440 0.1287704546 - - PREDICTED: probable protein disulfide-isomerase A6 [Jatropha curcas]
20 Hb_065968_010 0.1288735274 - - PREDICTED: probable glycosyltransferase At3g07620 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001689_040 Hb_001689_040 Hb_011377_040 Hb_011377_040 Hb_001689_040--Hb_011377_040 Hb_022092_010 Hb_022092_010 Hb_001689_040--Hb_022092_010 Hb_002284_100 Hb_002284_100 Hb_001689_040--Hb_002284_100 Hb_015884_020 Hb_015884_020 Hb_001689_040--Hb_015884_020 Hb_010172_010 Hb_010172_010 Hb_001689_040--Hb_010172_010 Hb_000979_130 Hb_000979_130 Hb_001689_040--Hb_000979_130 Hb_006970_020 Hb_006970_020 Hb_011377_040--Hb_006970_020 Hb_074197_040 Hb_074197_040 Hb_011377_040--Hb_074197_040 Hb_012330_010 Hb_012330_010 Hb_011377_040--Hb_012330_010 Hb_001301_270 Hb_001301_270 Hb_011377_040--Hb_001301_270 Hb_000078_140 Hb_000078_140 Hb_011377_040--Hb_000078_140 Hb_000046_540 Hb_000046_540 Hb_011377_040--Hb_000046_540 Hb_002392_020 Hb_002392_020 Hb_022092_010--Hb_002392_020 Hb_013358_050 Hb_013358_050 Hb_022092_010--Hb_013358_050 Hb_132101_010 Hb_132101_010 Hb_022092_010--Hb_132101_010 Hb_022092_010--Hb_002284_100 Hb_000365_200 Hb_000365_200 Hb_022092_010--Hb_000365_200 Hb_002552_040 Hb_002552_040 Hb_002284_100--Hb_002552_040 Hb_002284_100--Hb_002392_020 Hb_000358_210 Hb_000358_210 Hb_002284_100--Hb_000358_210 Hb_011214_110 Hb_011214_110 Hb_002284_100--Hb_011214_110 Hb_005846_050 Hb_005846_050 Hb_002284_100--Hb_005846_050 Hb_019654_020 Hb_019654_020 Hb_002284_100--Hb_019654_020 Hb_005694_060 Hb_005694_060 Hb_015884_020--Hb_005694_060 Hb_001117_110 Hb_001117_110 Hb_015884_020--Hb_001117_110 Hb_015884_020--Hb_019654_020 Hb_015884_020--Hb_006970_020 Hb_015884_020--Hb_000979_130 Hb_002687_200 Hb_002687_200 Hb_015884_020--Hb_002687_200 Hb_002837_040 Hb_002837_040 Hb_010172_010--Hb_002837_040 Hb_003058_100 Hb_003058_100 Hb_010172_010--Hb_003058_100 Hb_010172_010--Hb_015884_020 Hb_001053_080 Hb_001053_080 Hb_010172_010--Hb_001053_080 Hb_000862_100 Hb_000862_100 Hb_010172_010--Hb_000862_100 Hb_003540_080 Hb_003540_080 Hb_010172_010--Hb_003540_080 Hb_000979_130--Hb_005694_060 Hb_000260_510 Hb_000260_510 Hb_000979_130--Hb_000260_510 Hb_000367_180 Hb_000367_180 Hb_000979_130--Hb_000367_180 Hb_000979_130--Hb_019654_020 Hb_000395_110 Hb_000395_110 Hb_000979_130--Hb_000395_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.43945 1.69184 5.0158 5.55711 2.10957 2.58982
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.693153 0.930122 3.28086 4.97262 6.23799

CAGE analysis