Hb_010172_010

Information

Type -
Description -
Location Contig10172: 13893-19606
Sequence    

Annotation

kegg
ID rcu:RCOM_1288390
description transferase, transferring glycosyl groups, putative (EC:2.4.1.134)
nr
ID XP_012072180.1
description PREDICTED: probable beta-1,3-galactosyltransferase 20 [Jatropha curcas]
swissprot
ID A7XDQ9
description Probable beta-1,3-galactosyltransferase 20 OS=Arabidopsis thaliana GN=B3GALT20 PE=2 SV=1
trembl
ID B9SYI3
description Transferase, transferring glycosyl groups, putative OS=Ricinus communis GN=RCOM_1288390 PE=4 SV=1
Gene Ontology
ID GO:0016020
description probable beta- -galactosyltransferase 20

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00800: 13718-19948
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010172_010 0.0 - - PREDICTED: probable beta-1,3-galactosyltransferase 20 [Jatropha curcas]
2 Hb_002837_040 0.0884543544 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
3 Hb_003058_100 0.0916790159 - - PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial [Jatropha curcas]
4 Hb_015884_020 0.0964136019 - - PREDICTED: protein PIR [Jatropha curcas]
5 Hb_001053_080 0.0976368187 - - OsCesA3 protein [Morus notabilis]
6 Hb_000862_100 0.0981515035 - - PREDICTED: plastid division protein CDP1, chloroplastic [Jatropha curcas]
7 Hb_003540_080 0.1002717479 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
8 Hb_005062_060 0.1009311415 - - PREDICTED: uncharacterized protein At4g06598-like [Jatropha curcas]
9 Hb_006970_020 0.1013691877 - - PREDICTED: DNA topoisomerase 6 subunit B [Jatropha curcas]
10 Hb_000388_150 0.1036350566 - - hypothetical protein JCGZ_21651 [Jatropha curcas]
11 Hb_019654_020 0.1043062219 - - PREDICTED: T-complex protein 1 subunit beta [Jatropha curcas]
12 Hb_001301_270 0.1049535605 - - PREDICTED: heat shock 70 kDa protein 16 [Jatropha curcas]
13 Hb_000815_300 0.105061829 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
14 Hb_002552_040 0.106017321 - - PREDICTED: uncharacterized protein LOC105641220 [Jatropha curcas]
15 Hb_011377_040 0.1065000635 - - PREDICTED: uncharacterized protein LOC105647286 [Jatropha curcas]
16 Hb_001689_040 0.107926361 - - PREDICTED: UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase 1-like [Jatropha curcas]
17 Hb_002284_100 0.1079599603 - - ribophorin, putative [Ricinus communis]
18 Hb_022693_130 0.1096472527 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
19 Hb_000903_010 0.1097048105 - - hypothetical protein JCGZ_23825 [Jatropha curcas]
20 Hb_002942_230 0.1098387149 - - PREDICTED: long chain base biosynthesis protein 2a [Populus euphratica]

Gene co-expression network

sample Hb_010172_010 Hb_010172_010 Hb_002837_040 Hb_002837_040 Hb_010172_010--Hb_002837_040 Hb_003058_100 Hb_003058_100 Hb_010172_010--Hb_003058_100 Hb_015884_020 Hb_015884_020 Hb_010172_010--Hb_015884_020 Hb_001053_080 Hb_001053_080 Hb_010172_010--Hb_001053_080 Hb_000862_100 Hb_000862_100 Hb_010172_010--Hb_000862_100 Hb_003540_080 Hb_003540_080 Hb_010172_010--Hb_003540_080 Hb_000645_070 Hb_000645_070 Hb_002837_040--Hb_000645_070 Hb_000903_010 Hb_000903_010 Hb_002837_040--Hb_000903_010 Hb_000154_050 Hb_000154_050 Hb_002837_040--Hb_000154_050 Hb_002749_080 Hb_002749_080 Hb_002837_040--Hb_002749_080 Hb_002837_040--Hb_003058_100 Hb_006588_160 Hb_006588_160 Hb_002837_040--Hb_006588_160 Hb_019654_020 Hb_019654_020 Hb_003058_100--Hb_019654_020 Hb_003058_100--Hb_000645_070 Hb_022693_130 Hb_022693_130 Hb_003058_100--Hb_022693_130 Hb_000645_180 Hb_000645_180 Hb_003058_100--Hb_000645_180 Hb_005694_060 Hb_005694_060 Hb_015884_020--Hb_005694_060 Hb_001117_110 Hb_001117_110 Hb_015884_020--Hb_001117_110 Hb_015884_020--Hb_019654_020 Hb_006970_020 Hb_006970_020 Hb_015884_020--Hb_006970_020 Hb_000979_130 Hb_000979_130 Hb_015884_020--Hb_000979_130 Hb_002687_200 Hb_002687_200 Hb_015884_020--Hb_002687_200 Hb_001279_090 Hb_001279_090 Hb_001053_080--Hb_001279_090 Hb_001279_020 Hb_001279_020 Hb_001053_080--Hb_001279_020 Hb_001053_080--Hb_006588_160 Hb_001140_180 Hb_001140_180 Hb_001053_080--Hb_001140_180 Hb_000001_090 Hb_000001_090 Hb_001053_080--Hb_000001_090 Hb_000358_210 Hb_000358_210 Hb_001053_080--Hb_000358_210 Hb_004705_160 Hb_004705_160 Hb_000862_100--Hb_004705_160 Hb_000862_100--Hb_006970_020 Hb_068079_010 Hb_068079_010 Hb_000862_100--Hb_068079_010 Hb_000815_300 Hb_000815_300 Hb_000862_100--Hb_000815_300 Hb_001159_060 Hb_001159_060 Hb_000862_100--Hb_001159_060 Hb_000406_210 Hb_000406_210 Hb_000862_100--Hb_000406_210 Hb_000035_220 Hb_000035_220 Hb_003540_080--Hb_000035_220 Hb_000152_190 Hb_000152_190 Hb_003540_080--Hb_000152_190 Hb_002942_230 Hb_002942_230 Hb_003540_080--Hb_002942_230 Hb_000510_150 Hb_000510_150 Hb_003540_080--Hb_000510_150 Hb_000258_220 Hb_000258_220 Hb_003540_080--Hb_000258_220 Hb_000665_170 Hb_000665_170 Hb_003540_080--Hb_000665_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.84507 2.5816 7.07287 8.73152 4.19429 3.15104
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.64245 1.34801 3.20567 3.9899 8.15303

CAGE analysis