Hb_003540_080

Information

Type -
Description -
Location Contig3540: 48857-52809
Sequence    

Annotation

kegg
ID rcu:RCOM_1125810
description leucine-rich repeat-containing protein, putative (EC:3.1.3.16)
nr
ID XP_002528571.1
description leucine-rich repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q6GPJ5
description Leucine-rich repeat-containing protein 40 OS=Xenopus laevis GN=lrrc40 PE=2 SV=1
trembl
ID B9SRF2
description Leucine-rich repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1125810 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36697: 32191-52927 , PASA_asmbl_36698: 32191-52891
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003540_080 0.0 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
2 Hb_000035_220 0.0682639722 - - PREDICTED: transmembrane 9 superfamily member 8 [Jatropha curcas]
3 Hb_000152_190 0.0808072108 - - PREDICTED: K(+) efflux antiporter 5 [Jatropha curcas]
4 Hb_002942_230 0.0837218627 - - PREDICTED: long chain base biosynthesis protein 2a [Populus euphratica]
5 Hb_000510_150 0.0873389641 - - PREDICTED: magnesium transporter MRS2-I-like isoform X1 [Jatropha curcas]
6 Hb_000258_220 0.0900981025 - - PREDICTED: probable methyltransferase PMT2 isoform X2 [Jatropha curcas]
7 Hb_000665_170 0.0906919761 - - PREDICTED: probable beta-1,3-galactosyltransferase 10 [Jatropha curcas]
8 Hb_000256_230 0.0912930667 - - PREDICTED: uncharacterized protein LOC105637594 [Jatropha curcas]
9 Hb_000395_110 0.0928297704 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
10 Hb_021576_070 0.0956643993 - - hypothetical protein PRUPE_ppa002736mg [Prunus persica]
11 Hb_000665_180 0.0982666444 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X2 [Jatropha curcas]
12 Hb_012194_060 0.1001311638 - - PREDICTED: uncharacterized protein LOC105636108 [Jatropha curcas]
13 Hb_010172_010 0.1002717479 - - PREDICTED: probable beta-1,3-galactosyltransferase 20 [Jatropha curcas]
14 Hb_003929_180 0.1010475767 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g17430 isoform X1 [Glycine max]
15 Hb_004126_040 0.1012083419 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003058_100 0.1042914671 - - PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial [Jatropha curcas]
17 Hb_000260_510 0.1044602004 - - PREDICTED: probable galacturonosyltransferase 7 isoform X3 [Jatropha curcas]
18 Hb_014361_060 0.1047025714 - - PREDICTED: probable prolyl 4-hydroxylase 9 [Jatropha curcas]
19 Hb_008025_010 0.1049952699 - - PREDICTED: lysosomal beta glucosidase-like [Musa acuminata subsp. malaccensis]
20 Hb_000665_190 0.1053080079 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003540_080 Hb_003540_080 Hb_000035_220 Hb_000035_220 Hb_003540_080--Hb_000035_220 Hb_000152_190 Hb_000152_190 Hb_003540_080--Hb_000152_190 Hb_002942_230 Hb_002942_230 Hb_003540_080--Hb_002942_230 Hb_000510_150 Hb_000510_150 Hb_003540_080--Hb_000510_150 Hb_000258_220 Hb_000258_220 Hb_003540_080--Hb_000258_220 Hb_000665_170 Hb_000665_170 Hb_003540_080--Hb_000665_170 Hb_000035_220--Hb_000510_150 Hb_000035_220--Hb_000665_170 Hb_000256_230 Hb_000256_230 Hb_000035_220--Hb_000256_230 Hb_012194_060 Hb_012194_060 Hb_000035_220--Hb_012194_060 Hb_004126_040 Hb_004126_040 Hb_000035_220--Hb_004126_040 Hb_000152_190--Hb_000258_220 Hb_006351_020 Hb_006351_020 Hb_000152_190--Hb_006351_020 Hb_004223_140 Hb_004223_140 Hb_000152_190--Hb_004223_140 Hb_003929_180 Hb_003929_180 Hb_000152_190--Hb_003929_180 Hb_164010_050 Hb_164010_050 Hb_000152_190--Hb_164010_050 Hb_002217_080 Hb_002217_080 Hb_002942_230--Hb_002217_080 Hb_000866_070 Hb_000866_070 Hb_002942_230--Hb_000866_070 Hb_001411_130 Hb_001411_130 Hb_002942_230--Hb_001411_130 Hb_000001_090 Hb_000001_090 Hb_002942_230--Hb_000001_090 Hb_002687_200 Hb_002687_200 Hb_002942_230--Hb_002687_200 Hb_002301_030 Hb_002301_030 Hb_000510_150--Hb_002301_030 Hb_000342_170 Hb_000342_170 Hb_000510_150--Hb_000342_170 Hb_000510_150--Hb_000665_170 Hb_000510_150--Hb_002942_230 Hb_029584_120 Hb_029584_120 Hb_000258_220--Hb_029584_120 Hb_000134_120 Hb_000134_120 Hb_000258_220--Hb_000134_120 Hb_000503_020 Hb_000503_020 Hb_000258_220--Hb_000503_020 Hb_074399_010 Hb_074399_010 Hb_000258_220--Hb_074399_010 Hb_000054_040 Hb_000054_040 Hb_000258_220--Hb_000054_040 Hb_000665_170--Hb_000256_230 Hb_003777_030 Hb_003777_030 Hb_000665_170--Hb_003777_030 Hb_010672_020 Hb_010672_020 Hb_000665_170--Hb_010672_020 Hb_003209_130 Hb_003209_130 Hb_000665_170--Hb_003209_130 Hb_007545_010 Hb_007545_010 Hb_000665_170--Hb_007545_010 Hb_000389_030 Hb_000389_030 Hb_000665_170--Hb_000389_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.17909 4.11588 11.1381 18.6913 3.81412 4.43823
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.98354 1.72756 3.99834 5.74716 10.4456

CAGE analysis