Hb_006351_020

Information

Type -
Description -
Location Contig6351: 54191-55222
Sequence    

Annotation

kegg
ID rcu:RCOM_0498250
description carbohydrate binding protein, putative
nr
ID XP_012088132.1
description PREDICTED: L-type lectin-domain containing receptor kinase S.4-like [Jatropha curcas]
swissprot
ID Q9M345
description L-type lectin-domain containing receptor kinase IV.2 OS=Arabidopsis thaliana GN=LECRK42 PE=2 SV=1
trembl
ID A0A067LC92
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01343 PE=4 SV=1
Gene Ontology
ID GO:0030246
description l-type lectin-domain containing receptor kinase -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006351_020 0.0 - - PREDICTED: L-type lectin-domain containing receptor kinase S.4-like [Jatropha curcas]
2 Hb_001119_070 0.0864876124 - - methylenetetrahydrofolate reductase, putative [Ricinus communis]
3 Hb_001545_130 0.0961901446 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
4 Hb_003929_180 0.0984697683 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g17430 isoform X1 [Glycine max]
5 Hb_004223_140 0.100060329 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
6 Hb_004032_210 0.1002659922 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000152_190 0.1077766833 - - PREDICTED: K(+) efflux antiporter 5 [Jatropha curcas]
8 Hb_005074_040 0.1132045995 - - ATP binding protein, putative [Ricinus communis]
9 Hb_021576_070 0.1135965725 - - hypothetical protein PRUPE_ppa002736mg [Prunus persica]
10 Hb_001216_110 0.1141870086 - - PREDICTED: protein GPR107-like [Jatropha curcas]
11 Hb_000327_360 0.1148315886 - - unnamed protein product [Coffea canephora]
12 Hb_031284_030 0.1151132466 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000152_710 0.1154047552 - - PREDICTED: putative glycerol-3-phosphate transporter 1 [Jatropha curcas]
14 Hb_028639_030 0.1163112304 - - PREDICTED: transmembrane 9 superfamily member 2-like [Jatropha curcas]
15 Hb_003540_080 0.1170464039 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
16 Hb_012807_150 0.1186473333 - - PREDICTED: alpha-L-fucosidase 1 [Jatropha curcas]
17 Hb_008025_010 0.1197522402 - - PREDICTED: lysosomal beta glucosidase-like [Musa acuminata subsp. malaccensis]
18 Hb_000679_040 0.1225732183 - - Cellulose synthase 1 [Theobroma cacao]
19 Hb_019654_060 0.1227849189 - - PREDICTED: rop guanine nucleotide exchange factor 1-like isoform X1 [Jatropha curcas]
20 Hb_004109_050 0.1239042781 - - PREDICTED: putative callose synthase 8 [Jatropha curcas]

Gene co-expression network

sample Hb_006351_020 Hb_006351_020 Hb_001119_070 Hb_001119_070 Hb_006351_020--Hb_001119_070 Hb_001545_130 Hb_001545_130 Hb_006351_020--Hb_001545_130 Hb_003929_180 Hb_003929_180 Hb_006351_020--Hb_003929_180 Hb_004223_140 Hb_004223_140 Hb_006351_020--Hb_004223_140 Hb_004032_210 Hb_004032_210 Hb_006351_020--Hb_004032_210 Hb_000152_190 Hb_000152_190 Hb_006351_020--Hb_000152_190 Hb_006615_230 Hb_006615_230 Hb_001119_070--Hb_006615_230 Hb_158092_040 Hb_158092_040 Hb_001119_070--Hb_158092_040 Hb_000806_130 Hb_000806_130 Hb_001119_070--Hb_000806_130 Hb_000696_070 Hb_000696_070 Hb_001119_070--Hb_000696_070 Hb_189003_070 Hb_189003_070 Hb_001119_070--Hb_189003_070 Hb_004218_130 Hb_004218_130 Hb_001545_130--Hb_004218_130 Hb_147245_010 Hb_147245_010 Hb_001545_130--Hb_147245_010 Hb_000003_030 Hb_000003_030 Hb_001545_130--Hb_000003_030 Hb_004109_050 Hb_004109_050 Hb_001545_130--Hb_004109_050 Hb_001545_130--Hb_004032_210 Hb_003929_180--Hb_004032_210 Hb_008725_270 Hb_008725_270 Hb_003929_180--Hb_008725_270 Hb_003929_180--Hb_004223_140 Hb_003929_180--Hb_004218_130 Hb_000012_080 Hb_000012_080 Hb_003929_180--Hb_000012_080 Hb_002028_190 Hb_002028_190 Hb_004223_140--Hb_002028_190 Hb_004223_140--Hb_004032_210 Hb_018845_010 Hb_018845_010 Hb_004223_140--Hb_018845_010 Hb_004223_140--Hb_000012_080 Hb_004032_210--Hb_000003_030 Hb_019654_060 Hb_019654_060 Hb_004032_210--Hb_019654_060 Hb_003540_080 Hb_003540_080 Hb_000152_190--Hb_003540_080 Hb_000258_220 Hb_000258_220 Hb_000152_190--Hb_000258_220 Hb_000152_190--Hb_004223_140 Hb_000152_190--Hb_003929_180 Hb_164010_050 Hb_164010_050 Hb_000152_190--Hb_164010_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.40208 10.5553 37.3343 83.2925 7.32027 9.47666
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.09173 5.90284 11.4526 24.4905 33.0069

CAGE analysis