Hb_135757_020

Information

Type -
Description -
Location Contig135757: 24608-25039
Sequence    

Annotation

kegg
ID atr:s00420p00013340
description AMTR_s00420p00013340; hypothetical protein
nr
ID ERN10468.1
description hypothetical protein AMTR_s00420p00013340 [Amborella trichopoda]
swissprot
ID -
description -
trembl
ID A0A0A9UZ51
description Uncharacterized protein OS=Arundo donax PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09955: 23790-26373
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_135757_020 0.0 - - hypothetical protein AMTR_s00420p00013340 [Amborella trichopoda]
2 Hb_004094_020 0.090775 - - Pyruvate kinase family protein isoform 1 [Theobroma cacao]
3 Hb_000221_240 0.1135181715 - - chloroplast 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase [Hevea brasiliensis]
4 Hb_001021_010 0.117658197 - - PREDICTED: bifunctional protein FolD 2 [Jatropha curcas]
5 Hb_004330_080 0.1194544433 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 8 isoform X1 [Jatropha curcas]
6 Hb_000824_050 0.1238424627 - - PREDICTED: nicotinate phosphoribosyltransferase 1 [Jatropha curcas]
7 Hb_019280_020 0.1245386516 - - PREDICTED: proline-rich receptor-like protein kinase PERK14 isoform X1 [Jatropha curcas]
8 Hb_000915_240 0.1256308469 - - catalytic, putative [Ricinus communis]
9 Hb_031527_080 0.1276112899 - - utp-glucose-1-phosphate uridylyltransferase, putative [Ricinus communis]
10 Hb_003988_050 0.1289746338 - - PREDICTED: zinc finger protein-like 1 homolog [Jatropha curcas]
11 Hb_029510_100 0.1291855609 - - scab resistance family protein [Populus trichocarpa]
12 Hb_001104_230 0.1302778685 - - PREDICTED: fructose-bisphosphate aldolase cytoplasmic isozyme [Jatropha curcas]
13 Hb_003994_220 0.1320105146 - - PREDICTED: V-type proton ATPase catalytic subunit A [Jatropha curcas]
14 Hb_001104_100 0.1347872321 - - RecName: Full=Enolase 2; AltName: Full=2-phospho-D-glycerate hydro-lyase 2; AltName: Full=2-phosphoglycerate dehydratase 2; AltName: Allergen=Hev b 9 [Hevea brasiliensis]
15 Hb_000928_190 0.1357195862 - - PREDICTED: putative acyl-activating enzyme 19 isoform X1 [Jatropha curcas]
16 Hb_001946_310 0.1359021727 - - PREDICTED: probable ethanolamine kinase isoform X2 [Jatropha curcas]
17 Hb_028872_110 0.1359994017 - - PREDICTED: uncharacterized protein LOC105644776 [Jatropha curcas]
18 Hb_001051_070 0.1361427349 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 isoform X2 [Jatropha curcas]
19 Hb_000009_060 0.1364029829 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B [Jatropha curcas]
20 Hb_135757_010 0.1370085553 - - PREDICTED: subtilisin-like protease SBT1.6 [Jatropha curcas]

Gene co-expression network

sample Hb_135757_020 Hb_135757_020 Hb_004094_020 Hb_004094_020 Hb_135757_020--Hb_004094_020 Hb_000221_240 Hb_000221_240 Hb_135757_020--Hb_000221_240 Hb_001021_010 Hb_001021_010 Hb_135757_020--Hb_001021_010 Hb_004330_080 Hb_004330_080 Hb_135757_020--Hb_004330_080 Hb_000824_050 Hb_000824_050 Hb_135757_020--Hb_000824_050 Hb_019280_020 Hb_019280_020 Hb_135757_020--Hb_019280_020 Hb_183867_010 Hb_183867_010 Hb_004094_020--Hb_183867_010 Hb_005914_140 Hb_005914_140 Hb_004094_020--Hb_005914_140 Hb_000494_030 Hb_000494_030 Hb_004094_020--Hb_000494_030 Hb_001006_270 Hb_001006_270 Hb_004094_020--Hb_001006_270 Hb_003994_220 Hb_003994_220 Hb_004094_020--Hb_003994_220 Hb_002093_060 Hb_002093_060 Hb_000221_240--Hb_002093_060 Hb_001104_100 Hb_001104_100 Hb_000221_240--Hb_001104_100 Hb_001957_010 Hb_001957_010 Hb_000221_240--Hb_001957_010 Hb_001104_230 Hb_001104_230 Hb_000221_240--Hb_001104_230 Hb_001769_060 Hb_001769_060 Hb_000221_240--Hb_001769_060 Hb_000009_060 Hb_000009_060 Hb_001021_010--Hb_000009_060 Hb_000389_030 Hb_000389_030 Hb_001021_010--Hb_000389_030 Hb_001097_040 Hb_001097_040 Hb_001021_010--Hb_001097_040 Hb_001021_010--Hb_003994_220 Hb_000703_330 Hb_000703_330 Hb_001021_010--Hb_000703_330 Hb_004525_040 Hb_004525_040 Hb_001021_010--Hb_004525_040 Hb_029510_100 Hb_029510_100 Hb_004330_080--Hb_029510_100 Hb_001014_190 Hb_001014_190 Hb_004330_080--Hb_001014_190 Hb_004330_080--Hb_004094_020 Hb_000029_440 Hb_000029_440 Hb_004330_080--Hb_000029_440 Hb_030565_110 Hb_030565_110 Hb_004330_080--Hb_030565_110 Hb_006922_090 Hb_006922_090 Hb_000824_050--Hb_006922_090 Hb_023827_020 Hb_023827_020 Hb_000824_050--Hb_023827_020 Hb_000679_190 Hb_000679_190 Hb_000824_050--Hb_000679_190 Hb_000824_050--Hb_004094_020 Hb_001946_310 Hb_001946_310 Hb_000824_050--Hb_001946_310 Hb_012362_030 Hb_012362_030 Hb_019280_020--Hb_012362_030 Hb_001481_150 Hb_001481_150 Hb_019280_020--Hb_001481_150 Hb_000152_710 Hb_000152_710 Hb_019280_020--Hb_000152_710 Hb_019280_020--Hb_029510_100 Hb_033152_070 Hb_033152_070 Hb_019280_020--Hb_033152_070 Hb_019280_020--Hb_004525_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.8526 9.20566 11.303 44.326 8.18219 9.00237
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.7398 5.69538 15.0915 35.3851 11.7211

CAGE analysis