Hb_006922_090

Information

Type -
Description -
Location Contig6922: 118100-123111
Sequence    

Annotation

kegg
ID rcu:RCOM_1241520
description hypothetical protein
nr
ID XP_012086463.1
description PREDICTED: interaptin [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JPI2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23927 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54483: 120806-121540
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006922_090 0.0 - - PREDICTED: interaptin [Jatropha curcas]
2 Hb_001366_060 0.1236696852 - - -
3 Hb_000824_050 0.1354245641 - - PREDICTED: nicotinate phosphoribosyltransferase 1 [Jatropha curcas]
4 Hb_012362_030 0.142929619 - - PREDICTED: GPI-anchored protein LORELEI-like [Populus euphratica]
5 Hb_000120_230 0.1456259539 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33990-like [Jatropha curcas]
6 Hb_029510_100 0.1516753957 - - scab resistance family protein [Populus trichocarpa]
7 Hb_019280_020 0.1517450575 - - PREDICTED: proline-rich receptor-like protein kinase PERK14 isoform X1 [Jatropha curcas]
8 Hb_001014_190 0.1527852344 - - PREDICTED: uncharacterized protein LOC105647294 [Jatropha curcas]
9 Hb_000057_080 0.1549803481 - - PREDICTED: probable ATP-dependent RNA helicase DDX11 [Jatropha curcas]
10 Hb_009898_040 0.1558722692 - - conserved hypothetical protein [Ricinus communis]
11 Hb_135757_020 0.157995299 - - hypothetical protein AMTR_s00420p00013340 [Amborella trichopoda]
12 Hb_001946_310 0.1611458383 - - PREDICTED: probable ethanolamine kinase isoform X2 [Jatropha curcas]
13 Hb_010872_040 0.1632504548 - - hypothetical protein F775_31993 [Aegilops tauschii]
14 Hb_000625_090 0.1692611768 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000139_140 0.1749166953 - - Acyl-CoA synthetase [Ricinus communis]
16 Hb_005914_140 0.177455167 - - PREDICTED: uncharacterized protein LOC105632183 [Jatropha curcas]
17 Hb_023827_020 0.1784951682 - - beta-1,3-glucanase 1 [Ziziphus jujuba]
18 Hb_000165_080 0.1794141256 - - PREDICTED: multiple inositol polyphosphate phosphatase 1 isoform X1 [Jatropha curcas]
19 Hb_001148_090 0.1805112865 - - hypothetical protein JCGZ_14711 [Jatropha curcas]
20 Hb_000144_120 0.1815619922 - - WD-repeat protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_006922_090 Hb_006922_090 Hb_001366_060 Hb_001366_060 Hb_006922_090--Hb_001366_060 Hb_000824_050 Hb_000824_050 Hb_006922_090--Hb_000824_050 Hb_012362_030 Hb_012362_030 Hb_006922_090--Hb_012362_030 Hb_000120_230 Hb_000120_230 Hb_006922_090--Hb_000120_230 Hb_029510_100 Hb_029510_100 Hb_006922_090--Hb_029510_100 Hb_019280_020 Hb_019280_020 Hb_006922_090--Hb_019280_020 Hb_001014_190 Hb_001014_190 Hb_001366_060--Hb_001014_190 Hb_009646_010 Hb_009646_010 Hb_001366_060--Hb_009646_010 Hb_005970_010 Hb_005970_010 Hb_001366_060--Hb_005970_010 Hb_010872_040 Hb_010872_040 Hb_001366_060--Hb_010872_040 Hb_001140_360 Hb_001140_360 Hb_001366_060--Hb_001140_360 Hb_135757_020 Hb_135757_020 Hb_000824_050--Hb_135757_020 Hb_023827_020 Hb_023827_020 Hb_000824_050--Hb_023827_020 Hb_000679_190 Hb_000679_190 Hb_000824_050--Hb_000679_190 Hb_004094_020 Hb_004094_020 Hb_000824_050--Hb_004094_020 Hb_001946_310 Hb_001946_310 Hb_000824_050--Hb_001946_310 Hb_012362_030--Hb_019280_020 Hb_000062_530 Hb_000062_530 Hb_012362_030--Hb_000062_530 Hb_000062_090 Hb_000062_090 Hb_012362_030--Hb_000062_090 Hb_012362_030--Hb_029510_100 Hb_147245_010 Hb_147245_010 Hb_012362_030--Hb_147245_010 Hb_000008_190 Hb_000008_190 Hb_012362_030--Hb_000008_190 Hb_011287_010 Hb_011287_010 Hb_000120_230--Hb_011287_010 Hb_000120_230--Hb_029510_100 Hb_008468_030 Hb_008468_030 Hb_000120_230--Hb_008468_030 Hb_006683_020 Hb_006683_020 Hb_000120_230--Hb_006683_020 Hb_005914_140 Hb_005914_140 Hb_000120_230--Hb_005914_140 Hb_000120_230--Hb_005970_010 Hb_029510_100--Hb_001014_190 Hb_004330_080 Hb_004330_080 Hb_029510_100--Hb_004330_080 Hb_029510_100--Hb_019280_020 Hb_029510_100--Hb_004094_020 Hb_001481_150 Hb_001481_150 Hb_019280_020--Hb_001481_150 Hb_000152_710 Hb_000152_710 Hb_019280_020--Hb_000152_710 Hb_033152_070 Hb_033152_070 Hb_019280_020--Hb_033152_070 Hb_004525_040 Hb_004525_040 Hb_019280_020--Hb_004525_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.190737 1.52108 1.03885 4.70102 0.251392 0.708716
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.34479 1.00588 1.04361 3.6347 0.671621

CAGE analysis