Hb_009646_010

Information

Type -
Description -
Location Contig9646: 9120-12873
Sequence    

Annotation

kegg
ID rcu:RCOM_0939570
description Gibberellin 20 oxidase, putative (EC:1.14.11.11)
nr
ID XP_012072467.1
description PREDICTED: hyoscyamine 6-dioxygenase-like [Jatropha curcas]
swissprot
ID Q39110
description Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana GN=GA20OX1 PE=2 SV=2
trembl
ID A0A067KTI9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04896 PE=3 SV=1
Gene Ontology
ID GO:0005506
description gibberellin 20

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63866: 8969-10533 , PASA_asmbl_63867: 10610-10895 , PASA_asmbl_63868: 11393-12868
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009646_010 0.0 - - PREDICTED: hyoscyamine 6-dioxygenase-like [Jatropha curcas]
2 Hb_000465_260 0.0846432578 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT4-like [Jatropha curcas]
3 Hb_002151_100 0.0940787259 - - PREDICTED: uncharacterized protein LOC105637951 [Jatropha curcas]
4 Hb_000110_300 0.1035573168 - - PREDICTED: uncharacterized protein LOC105642013 [Jatropha curcas]
5 Hb_001341_200 0.1111194412 transcription factor TF Family: ARF PREDICTED: auxin response factor 4 [Jatropha curcas]
6 Hb_000056_280 0.1125013301 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
7 Hb_128589_010 0.1153033428 - - PREDICTED: cyclin-dependent kinase inhibitor 5 [Jatropha curcas]
8 Hb_000009_140 0.1171956767 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 1 protein, putative [Ricinus communis]
9 Hb_033363_010 0.1176688828 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
10 Hb_005970_010 0.1253468579 - - PREDICTED: probable isoprenylcysteine alpha-carbonyl methylesterase ICMEL1 isoform X2 [Jatropha curcas]
11 Hb_001054_090 0.1256627562 - - Potassium channel SKOR, putative [Ricinus communis]
12 Hb_005779_030 0.1264761791 - - PREDICTED: nuclear pore complex protein NUP62 [Jatropha curcas]
13 Hb_003506_020 0.1268750458 - - PREDICTED: uncharacterized protein LOC105125881 isoform X1 [Populus euphratica]
14 Hb_001818_060 0.1271227334 - - PREDICTED: cysteine proteinase inhibitor 5-like [Jatropha curcas]
15 Hb_005504_030 0.1285364836 - - PREDICTED: somatic embryogenesis receptor kinase 2-like [Pyrus x bretschneideri]
16 Hb_000649_120 0.132028545 - - ankyrin repeat-containing protein, putative [Ricinus communis]
17 Hb_000139_140 0.1329804626 - - Acyl-CoA synthetase [Ricinus communis]
18 Hb_000805_190 0.1356392354 transcription factor TF Family: GRAS PREDICTED: uncharacterized protein LOC103323607 [Prunus mume]
19 Hb_000072_020 0.136241875 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X2 [Jatropha curcas]
20 Hb_000120_230 0.1365038026 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33990-like [Jatropha curcas]

Gene co-expression network

sample Hb_009646_010 Hb_009646_010 Hb_000465_260 Hb_000465_260 Hb_009646_010--Hb_000465_260 Hb_002151_100 Hb_002151_100 Hb_009646_010--Hb_002151_100 Hb_000110_300 Hb_000110_300 Hb_009646_010--Hb_000110_300 Hb_001341_200 Hb_001341_200 Hb_009646_010--Hb_001341_200 Hb_000056_280 Hb_000056_280 Hb_009646_010--Hb_000056_280 Hb_128589_010 Hb_128589_010 Hb_009646_010--Hb_128589_010 Hb_000465_260--Hb_000056_280 Hb_004631_110 Hb_004631_110 Hb_000465_260--Hb_004631_110 Hb_001818_060 Hb_001818_060 Hb_000465_260--Hb_001818_060 Hb_000025_400 Hb_000025_400 Hb_000465_260--Hb_000025_400 Hb_033363_010 Hb_033363_010 Hb_000465_260--Hb_033363_010 Hb_002235_310 Hb_002235_310 Hb_002151_100--Hb_002235_310 Hb_053575_020 Hb_053575_020 Hb_002151_100--Hb_053575_020 Hb_003506_020 Hb_003506_020 Hb_002151_100--Hb_003506_020 Hb_002151_100--Hb_000056_280 Hb_000649_120 Hb_000649_120 Hb_002151_100--Hb_000649_120 Hb_003747_210 Hb_003747_210 Hb_000110_300--Hb_003747_210 Hb_002217_090 Hb_002217_090 Hb_000110_300--Hb_002217_090 Hb_002915_060 Hb_002915_060 Hb_000110_300--Hb_002915_060 Hb_001956_060 Hb_001956_060 Hb_000110_300--Hb_001956_060 Hb_000012_240 Hb_000012_240 Hb_000110_300--Hb_000012_240 Hb_005181_180 Hb_005181_180 Hb_001341_200--Hb_005181_180 Hb_004495_020 Hb_004495_020 Hb_001341_200--Hb_004495_020 Hb_029584_090 Hb_029584_090 Hb_001341_200--Hb_029584_090 Hb_004195_090 Hb_004195_090 Hb_001341_200--Hb_004195_090 Hb_000139_140 Hb_000139_140 Hb_001341_200--Hb_000139_140 Hb_000805_190 Hb_000805_190 Hb_000056_280--Hb_000805_190 Hb_000072_020 Hb_000072_020 Hb_000056_280--Hb_000072_020 Hb_000056_280--Hb_033363_010 Hb_128589_010--Hb_001956_060 Hb_128589_010--Hb_000110_300 Hb_000205_250 Hb_000205_250 Hb_128589_010--Hb_000205_250 Hb_000345_320 Hb_000345_320 Hb_128589_010--Hb_000345_320 Hb_000625_090 Hb_000625_090 Hb_128589_010--Hb_000625_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.46741 41.3602 19.919 42.1175 4.89825 5.88703
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.91532 8.71096 7.47263 36.8568 12.4238

CAGE analysis