Hb_005181_180

Information

Type -
Description -
Location Contig5181: 88467-89864
Sequence    

Annotation

kegg
ID rcu:RCOM_1000460
description hypothetical protein
nr
ID XP_002519217.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8LGG8
description Universal stress protein A-like protein OS=Arabidopsis thaliana GN=At3g01520 PE=1 SV=2
trembl
ID B9RZP8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1000460 PE=4 SV=1
Gene Ontology
ID GO:0005622
description universal stress protein a-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46576: 88486-89823
cDNA
(Sanger)
(ID:Location)		 006_C17.ab1: 88526-89823 , 008_L12.ab1: 88526-89823 , 022_K03.ab1: 88526-89117

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005181_180 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001341_200 0.1113877287 transcription factor TF Family: ARF PREDICTED: auxin response factor 4 [Jatropha curcas]
3 Hb_000702_060 0.1191439788 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000684_360 0.1305532617 transcription factor TF Family: AP2 hypothetical protein JCGZ_16454 [Jatropha curcas]
5 Hb_003607_060 0.1323161807 - - PREDICTED: alcohol dehydrogenase-like [Jatropha curcas]
6 Hb_000793_040 0.1472234647 - - PREDICTED: transcription factor LHW [Jatropha curcas]
7 Hb_001900_060 0.1497506396 - - PREDICTED: neutral alpha-glucosidase C [Jatropha curcas]
8 Hb_002539_010 0.1511606456 - - hypothetical protein JCGZ_15711 [Jatropha curcas]
9 Hb_002151_100 0.1521195698 - - PREDICTED: uncharacterized protein LOC105637951 [Jatropha curcas]
10 Hb_004041_100 0.1546582784 - - -
11 Hb_003626_040 0.1550126978 - - PREDICTED: probable 2-oxoglutarate-dependent dioxygenase At3g49630 isoform X2 [Jatropha curcas]
12 Hb_000139_140 0.1579396295 - - Acyl-CoA synthetase [Ricinus communis]
13 Hb_003894_100 0.1586547505 - - PREDICTED: AT-hook motif nuclear-localized protein 1-like [Jatropha curcas]
14 Hb_001021_030 0.1602561119 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
15 Hb_053575_020 0.1605475873 - - PREDICTED: RNA-binding protein 39 [Jatropha curcas]
16 Hb_000337_010 0.1609038713 - - PREDICTED: proteasome activator subunit 4 isoform X2 [Jatropha curcas]
17 Hb_006717_070 0.1610522731 transcription factor TF Family: MYB-related PREDICTED: transcription factor CPC-like [Jatropha curcas]
18 Hb_009646_010 0.1622613713 - - PREDICTED: hyoscyamine 6-dioxygenase-like [Jatropha curcas]
19 Hb_001500_070 0.1631593359 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002026_080 0.1634307234 desease resistance Gene Name: TIR_2 nucleoside-triphosphatase, putative [Ricinus communis]

Gene co-expression network

sample Hb_005181_180 Hb_005181_180 Hb_001341_200 Hb_001341_200 Hb_005181_180--Hb_001341_200 Hb_000702_060 Hb_000702_060 Hb_005181_180--Hb_000702_060 Hb_000684_360 Hb_000684_360 Hb_005181_180--Hb_000684_360 Hb_003607_060 Hb_003607_060 Hb_005181_180--Hb_003607_060 Hb_000793_040 Hb_000793_040 Hb_005181_180--Hb_000793_040 Hb_001900_060 Hb_001900_060 Hb_005181_180--Hb_001900_060 Hb_009646_010 Hb_009646_010 Hb_001341_200--Hb_009646_010 Hb_004495_020 Hb_004495_020 Hb_001341_200--Hb_004495_020 Hb_029584_090 Hb_029584_090 Hb_001341_200--Hb_029584_090 Hb_004195_090 Hb_004195_090 Hb_001341_200--Hb_004195_090 Hb_000139_140 Hb_000139_140 Hb_001341_200--Hb_000139_140 Hb_000702_060--Hb_000684_360 Hb_053575_020 Hb_053575_020 Hb_000702_060--Hb_053575_020 Hb_000337_010 Hb_000337_010 Hb_000702_060--Hb_000337_010 Hb_000347_110 Hb_000347_110 Hb_000702_060--Hb_000347_110 Hb_001780_150 Hb_001780_150 Hb_000702_060--Hb_001780_150 Hb_003125_180 Hb_003125_180 Hb_000684_360--Hb_003125_180 Hb_000684_360--Hb_053575_020 Hb_169051_010 Hb_169051_010 Hb_000684_360--Hb_169051_010 Hb_000157_070 Hb_000157_070 Hb_000684_360--Hb_000157_070 Hb_029879_120 Hb_029879_120 Hb_000684_360--Hb_029879_120 Hb_003607_060--Hb_000702_060 Hb_003607_060--Hb_001341_200 Hb_003607_060--Hb_000139_140 Hb_000009_140 Hb_000009_140 Hb_003607_060--Hb_000009_140 Hb_004586_240 Hb_004586_240 Hb_003607_060--Hb_004586_240 Hb_001486_060 Hb_001486_060 Hb_000793_040--Hb_001486_060 Hb_002928_120 Hb_002928_120 Hb_000793_040--Hb_002928_120 Hb_005288_210 Hb_005288_210 Hb_000793_040--Hb_005288_210 Hb_020378_010 Hb_020378_010 Hb_000793_040--Hb_020378_010 Hb_001493_020 Hb_001493_020 Hb_000793_040--Hb_001493_020 Hb_002420_010 Hb_002420_010 Hb_000793_040--Hb_002420_010 Hb_001900_060--Hb_000702_060 Hb_001900_060--Hb_000684_360 Hb_001900_060--Hb_169051_010 Hb_000362_110 Hb_000362_110 Hb_001900_060--Hb_000362_110 Hb_001900_060--Hb_000793_040 Hb_000083_130 Hb_000083_130 Hb_001900_060--Hb_000083_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
39.7647 300.993 149.784 383.005 26.6013 52.1433
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
101.198 71.6101 23.883 640.926 159.862

CAGE analysis