Hb_000702_060

Information

Type -
Description -
Location Contig702: 96493-109315
Sequence    

Annotation

kegg
ID rcu:RCOM_0837850
description hypothetical protein
nr
ID XP_002522488.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID F4I248
description CSC1-like protein At1g69450 OS=Arabidopsis thaliana GN=At1g69450 PE=2 SV=1
trembl
ID B9S919
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0837850 PE=4 SV=1
Gene Ontology
ID GO:0016020
description csc1-like protein at1g69450

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54901: 96557-109243
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000702_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000684_360 0.1117847825 transcription factor TF Family: AP2 hypothetical protein JCGZ_16454 [Jatropha curcas]
3 Hb_053575_020 0.1122822277 - - PREDICTED: RNA-binding protein 39 [Jatropha curcas]
4 Hb_000337_010 0.1156411721 - - PREDICTED: proteasome activator subunit 4 isoform X2 [Jatropha curcas]
5 Hb_000347_110 0.1180395838 - - BnaA05g25330D [Brassica napus]
6 Hb_001780_150 0.1188615572 - - ceramidase, putative [Ricinus communis]
7 Hb_005181_180 0.1191439788 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001900_060 0.1195892307 - - PREDICTED: neutral alpha-glucosidase C [Jatropha curcas]
9 Hb_003626_040 0.1227809992 - - PREDICTED: probable 2-oxoglutarate-dependent dioxygenase At3g49630 isoform X2 [Jatropha curcas]
10 Hb_000227_040 0.1230189707 - - Stem-specific protein TSJT1, putative [Ricinus communis]
11 Hb_000157_070 0.1291786274 - - PREDICTED: alpha-N-acetylglucosaminidase [Jatropha curcas]
12 Hb_002301_250 0.13144078 - - PREDICTED: putative E3 ubiquitin-protein ligase RING1a [Jatropha curcas]
13 Hb_000823_010 0.13209879 - - PREDICTED: splicing factor U2af large subunit B isoform X1 [Jatropha curcas]
14 Hb_002213_090 0.1362784911 - - PREDICTED: uncharacterized protein LOC105640147 [Jatropha curcas]
15 Hb_006717_070 0.1367850661 transcription factor TF Family: MYB-related PREDICTED: transcription factor CPC-like [Jatropha curcas]
16 Hb_003517_020 0.137917083 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter C family member 3-like [Jatropha curcas]
17 Hb_003607_060 0.1382282513 - - PREDICTED: alcohol dehydrogenase-like [Jatropha curcas]
18 Hb_000244_280 0.1385883335 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 51 isoform X1 [Jatropha curcas]
19 Hb_001322_180 0.1388341698 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 26 [Jatropha curcas]
20 Hb_000019_170 0.1394436202 - - PREDICTED: alpha-mannosidase [Jatropha curcas]

Gene co-expression network

sample Hb_000702_060 Hb_000702_060 Hb_000684_360 Hb_000684_360 Hb_000702_060--Hb_000684_360 Hb_053575_020 Hb_053575_020 Hb_000702_060--Hb_053575_020 Hb_000337_010 Hb_000337_010 Hb_000702_060--Hb_000337_010 Hb_000347_110 Hb_000347_110 Hb_000702_060--Hb_000347_110 Hb_001780_150 Hb_001780_150 Hb_000702_060--Hb_001780_150 Hb_005181_180 Hb_005181_180 Hb_000702_060--Hb_005181_180 Hb_003125_180 Hb_003125_180 Hb_000684_360--Hb_003125_180 Hb_000684_360--Hb_053575_020 Hb_169051_010 Hb_169051_010 Hb_000684_360--Hb_169051_010 Hb_000157_070 Hb_000157_070 Hb_000684_360--Hb_000157_070 Hb_029879_120 Hb_029879_120 Hb_000684_360--Hb_029879_120 Hb_011032_010 Hb_011032_010 Hb_053575_020--Hb_011032_010 Hb_053575_020--Hb_003125_180 Hb_000227_330 Hb_000227_330 Hb_053575_020--Hb_000227_330 Hb_002151_100 Hb_002151_100 Hb_053575_020--Hb_002151_100 Hb_000866_110 Hb_000866_110 Hb_053575_020--Hb_000866_110 Hb_002026_070 Hb_002026_070 Hb_000337_010--Hb_002026_070 Hb_009535_030 Hb_009535_030 Hb_000337_010--Hb_009535_030 Hb_000337_010--Hb_053575_020 Hb_001235_130 Hb_001235_130 Hb_000337_010--Hb_001235_130 Hb_012325_010 Hb_012325_010 Hb_000337_010--Hb_012325_010 Hb_003813_120 Hb_003813_120 Hb_000347_110--Hb_003813_120 Hb_000173_260 Hb_000173_260 Hb_000347_110--Hb_000173_260 Hb_004041_100 Hb_004041_100 Hb_000347_110--Hb_004041_100 Hb_011360_060 Hb_011360_060 Hb_000347_110--Hb_011360_060 Hb_000181_020 Hb_000181_020 Hb_000347_110--Hb_000181_020 Hb_003626_040 Hb_003626_040 Hb_000347_110--Hb_003626_040 Hb_000395_220 Hb_000395_220 Hb_001780_150--Hb_000395_220 Hb_011287_010 Hb_011287_010 Hb_001780_150--Hb_011287_010 Hb_075315_010 Hb_075315_010 Hb_001780_150--Hb_075315_010 Hb_007426_140 Hb_007426_140 Hb_001780_150--Hb_007426_140 Hb_002851_010 Hb_002851_010 Hb_001780_150--Hb_002851_010 Hb_000227_040 Hb_000227_040 Hb_001780_150--Hb_000227_040 Hb_001341_200 Hb_001341_200 Hb_005181_180--Hb_001341_200 Hb_005181_180--Hb_000684_360 Hb_003607_060 Hb_003607_060 Hb_005181_180--Hb_003607_060 Hb_000793_040 Hb_000793_040 Hb_005181_180--Hb_000793_040 Hb_001900_060 Hb_001900_060 Hb_005181_180--Hb_001900_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.33511 6.1257 3.53634 7.68807 1.62944 2.10558
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.194 1.17446 1.299 15.7373 4.50405

CAGE analysis