Hb_000227_040

Information

Type -
Description -
Location Contig227: 32545-35624
Sequence    

Annotation

kegg
ID rcu:RCOM_0913370
description Stem-specific protein TSJT1, putative
nr
ID XP_002517179.1
description Stem-specific protein TSJT1, putative [Ricinus communis]
swissprot
ID P24805
description Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1
trembl
ID B9RTW0
description Stem-specific protein TSJT1, putative OS=Ricinus communis GN=RCOM_0913370 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23582: 32532-35698 , PASA_asmbl_23583: 32826-33193 , PASA_asmbl_23584: 33357-34544 , PASA_asmbl_23585: 34007-34162
cDNA
(Sanger)
(ID:Location)		 005_K13.ab1: 32532-35195 , 047_L18.ab1: 32532-35169 , 051_D01.ab1: 32587-34825 , 052_A22.ab1: 32535-35193 , 052_P17.ab1: 32532-35109

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000227_040 0.0 - - Stem-specific protein TSJT1, putative [Ricinus communis]
2 Hb_009732_020 0.0896579253 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
3 Hb_011287_010 0.0933439812 - - ubiquitin-protein ligase, putative [Ricinus communis]
4 Hb_012545_090 0.0954154966 - - hypothetical protein JCGZ_04320 [Jatropha curcas]
5 Hb_000395_220 0.1084185841 - - PREDICTED: LOW QUALITY PROTEIN: ultraviolet-B receptor UVR8 [Jatropha curcas]
6 Hb_001780_150 0.1142253926 - - ceramidase, putative [Ricinus communis]
7 Hb_012760_040 0.1203062656 - - PREDICTED: aconitate hydratase 1 [Jatropha curcas]
8 Hb_000702_060 0.1230189707 - - conserved hypothetical protein [Ricinus communis]
9 Hb_127886_010 0.1284839385 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
10 Hb_000317_350 0.1292055423 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]
11 Hb_001322_180 0.1334033412 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 26 [Jatropha curcas]
12 Hb_000321_090 0.13451714 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Jatropha curcas]
13 Hb_003906_170 0.1352578793 - - alcohol dehydrogenase, putative [Ricinus communis]
14 Hb_000347_110 0.1363059618 - - BnaA05g25330D [Brassica napus]
15 Hb_003813_120 0.1369733618 - - zinc finger protein, putative [Ricinus communis]
16 Hb_005081_020 0.1374852955 - - PREDICTED: ninja-family protein mc410 [Jatropha curcas]
17 Hb_020805_180 0.1375082479 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
18 Hb_006717_070 0.1376999438 transcription factor TF Family: MYB-related PREDICTED: transcription factor CPC-like [Jatropha curcas]
19 Hb_000190_090 0.1377373102 - - PREDICTED: uncharacterized protein LOC105649930 [Jatropha curcas]
20 Hb_008226_070 0.1385621508 - - PREDICTED: expansin-A8 [Jatropha curcas]

Gene co-expression network

sample Hb_000227_040 Hb_000227_040 Hb_009732_020 Hb_009732_020 Hb_000227_040--Hb_009732_020 Hb_011287_010 Hb_011287_010 Hb_000227_040--Hb_011287_010 Hb_012545_090 Hb_012545_090 Hb_000227_040--Hb_012545_090 Hb_000395_220 Hb_000395_220 Hb_000227_040--Hb_000395_220 Hb_001780_150 Hb_001780_150 Hb_000227_040--Hb_001780_150 Hb_012760_040 Hb_012760_040 Hb_000227_040--Hb_012760_040 Hb_009732_020--Hb_000395_220 Hb_003906_170 Hb_003906_170 Hb_009732_020--Hb_003906_170 Hb_006717_070 Hb_006717_070 Hb_009732_020--Hb_006717_070 Hb_005333_050 Hb_005333_050 Hb_009732_020--Hb_005333_050 Hb_003849_240 Hb_003849_240 Hb_009732_020--Hb_003849_240 Hb_002217_220 Hb_002217_220 Hb_011287_010--Hb_002217_220 Hb_011287_010--Hb_000395_220 Hb_000260_660 Hb_000260_660 Hb_011287_010--Hb_000260_660 Hb_001642_070 Hb_001642_070 Hb_011287_010--Hb_001642_070 Hb_011287_010--Hb_012760_040 Hb_008226_070 Hb_008226_070 Hb_012545_090--Hb_008226_070 Hb_012545_090--Hb_012760_040 Hb_004129_050 Hb_004129_050 Hb_012545_090--Hb_004129_050 Hb_000702_060 Hb_000702_060 Hb_012545_090--Hb_000702_060 Hb_012545_090--Hb_009732_020 Hb_007426_140 Hb_007426_140 Hb_000395_220--Hb_007426_140 Hb_083799_010 Hb_083799_010 Hb_000395_220--Hb_083799_010 Hb_000395_220--Hb_001780_150 Hb_002272_170 Hb_002272_170 Hb_000395_220--Hb_002272_170 Hb_001780_150--Hb_011287_010 Hb_075315_010 Hb_075315_010 Hb_001780_150--Hb_075315_010 Hb_001780_150--Hb_007426_140 Hb_002851_010 Hb_002851_010 Hb_001780_150--Hb_002851_010 Hb_042474_010 Hb_042474_010 Hb_012760_040--Hb_042474_010 Hb_000144_120 Hb_000144_120 Hb_012760_040--Hb_000144_120 Hb_000190_090 Hb_000190_090 Hb_012760_040--Hb_000190_090 Hb_012760_040--Hb_008226_070 Hb_006916_110 Hb_006916_110 Hb_012760_040--Hb_006916_110 Hb_082741_010 Hb_082741_010 Hb_012760_040--Hb_082741_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
133.257 370.856 235.057 354.676 162.7 166.662
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
120.533 131.988 218.556 1084.44 266.745

CAGE analysis