Hb_005333_050

Information

Type -
Description -
Location Contig5333: 29735-36055
Sequence    

Annotation

kegg
ID rcu:RCOM_1039110
description glucose-6-phosphate isomerase, putative (EC:5.3.1.9)
nr
ID XP_012067970.1
description PREDICTED: glucose-6-phosphate isomerase 1, chloroplastic [Jatropha curcas]
swissprot
ID Q8H103
description Glucose-6-phosphate isomerase 1, chloroplastic OS=Arabidopsis thaliana GN=PGI1 PE=1 SV=1
trembl
ID A0A067KZ28
description Glucose-6-phosphate isomerase OS=Jatropha curcas GN=JCGZ_15868 PE=3 SV=1
Gene Ontology
ID GO:0005829
description glucose-6-phosphate isomerase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47461: 29791-35988 , PASA_asmbl_47462: 34876-35643
cDNA
(Sanger)
(ID:Location)		 025_J13.ab1: 29791-31516

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005333_050 0.0 - - PREDICTED: glucose-6-phosphate isomerase 1, chloroplastic [Jatropha curcas]
2 Hb_002046_010 0.0774268377 - - conserved hypothetical protein [Ricinus communis]
3 Hb_019840_030 0.080538332 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
4 Hb_000022_150 0.0830126566 - - -
5 Hb_039946_050 0.0843171153 - - catalytic, putative [Ricinus communis]
6 Hb_000009_120 0.0875794567 - - PREDICTED: probable Xaa-Pro aminopeptidase P isoform X1 [Jatropha curcas]
7 Hb_002889_020 0.0908387394 - - PREDICTED: mitogen-activated protein kinase kinase 3 [Jatropha curcas]
8 Hb_007747_170 0.0912427316 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
9 Hb_021576_010 0.0914033939 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
10 Hb_006829_100 0.0919922487 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000742_170 0.0922235315 - - PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial isoform X1 [Jatropha curcas]
12 Hb_000979_220 0.093198355 - - PREDICTED: uncharacterized protein LOC105634085 isoform X1 [Jatropha curcas]
13 Hb_002596_060 0.0938830993 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001221_180 0.0941756977 - - calcineurin-like phosphoesterase [Manihot esculenta]
15 Hb_002259_080 0.0945737567 - - protein transport protein sec23, putative [Ricinus communis]
16 Hb_000608_230 0.094775751 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]
17 Hb_075315_010 0.0947843474 - - ornithine aminotransferase [Camellia sinensis]
18 Hb_000317_350 0.095898317 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]
19 Hb_000340_490 0.0974011955 - - PREDICTED: ankyrin-1-like [Jatropha curcas]
20 Hb_003849_240 0.0974560319 - - leucine-rich repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_005333_050 Hb_005333_050 Hb_002046_010 Hb_002046_010 Hb_005333_050--Hb_002046_010 Hb_019840_030 Hb_019840_030 Hb_005333_050--Hb_019840_030 Hb_000022_150 Hb_000022_150 Hb_005333_050--Hb_000022_150 Hb_039946_050 Hb_039946_050 Hb_005333_050--Hb_039946_050 Hb_000009_120 Hb_000009_120 Hb_005333_050--Hb_000009_120 Hb_002889_020 Hb_002889_020 Hb_005333_050--Hb_002889_020 Hb_000742_170 Hb_000742_170 Hb_002046_010--Hb_000742_170 Hb_001009_280 Hb_001009_280 Hb_002046_010--Hb_001009_280 Hb_000979_220 Hb_000979_220 Hb_002046_010--Hb_000979_220 Hb_183510_020 Hb_183510_020 Hb_002046_010--Hb_183510_020 Hb_016734_060 Hb_016734_060 Hb_002046_010--Hb_016734_060 Hb_060980_010 Hb_060980_010 Hb_019840_030--Hb_060980_010 Hb_002596_060 Hb_002596_060 Hb_019840_030--Hb_002596_060 Hb_007747_170 Hb_007747_170 Hb_019840_030--Hb_007747_170 Hb_001221_180 Hb_001221_180 Hb_019840_030--Hb_001221_180 Hb_001085_290 Hb_001085_290 Hb_019840_030--Hb_001085_290 Hb_027506_010 Hb_027506_010 Hb_019840_030--Hb_027506_010 Hb_000022_150--Hb_000742_170 Hb_000317_350 Hb_000317_350 Hb_000022_150--Hb_000317_350 Hb_000800_110 Hb_000800_110 Hb_000022_150--Hb_000800_110 Hb_004218_250 Hb_004218_250 Hb_000022_150--Hb_004218_250 Hb_000950_060 Hb_000950_060 Hb_000022_150--Hb_000950_060 Hb_005663_110 Hb_005663_110 Hb_039946_050--Hb_005663_110 Hb_041327_010 Hb_041327_010 Hb_039946_050--Hb_041327_010 Hb_179306_020 Hb_179306_020 Hb_039946_050--Hb_179306_020 Hb_000099_030 Hb_000099_030 Hb_039946_050--Hb_000099_030 Hb_000069_120 Hb_000069_120 Hb_039946_050--Hb_000069_120 Hb_000537_050 Hb_000537_050 Hb_039946_050--Hb_000537_050 Hb_003849_240 Hb_003849_240 Hb_000009_120--Hb_003849_240 Hb_001414_040 Hb_001414_040 Hb_000009_120--Hb_001414_040 Hb_000009_120--Hb_002889_020 Hb_006829_100 Hb_006829_100 Hb_000009_120--Hb_006829_100 Hb_000080_110 Hb_000080_110 Hb_000009_120--Hb_000080_110 Hb_000003_100 Hb_000003_100 Hb_002889_020--Hb_000003_100 Hb_000331_580 Hb_000331_580 Hb_002889_020--Hb_000331_580 Hb_011618_090 Hb_011618_090 Hb_002889_020--Hb_011618_090 Hb_012286_040 Hb_012286_040 Hb_002889_020--Hb_012286_040 Hb_002889_020--Hb_019840_030 Hb_001167_050 Hb_001167_050 Hb_002889_020--Hb_001167_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.90791 16.7456 11.24 13.673 13.3665 8.63879
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.14307 6.30256 7.55608 30.6672 15.4914

CAGE analysis