Hb_000800_110

Information

Type -
Description -
Location Contig800: 227737-229228
Sequence    

Annotation

kegg
ID rcu:RCOM_0869370
description NAD dehydrogenase, putative (EC:1.1.99.2)
nr
ID XP_002527381.1
description NAD dehydrogenase, putative [Ricinus communis]
swissprot
ID A7SMW7
description L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Nematostella vectensis GN=v1g172254 PE=3 SV=1
trembl
ID B9SN12
description NAD dehydrogenase, putative OS=Ricinus communis GN=RCOM_0869370 PE=4 SV=1
Gene Ontology
ID GO:0016491
description l-2-hydroxyglutarate mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58772: 227360-229350
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000800_110 0.0 - - NAD dehydrogenase, putative [Ricinus communis]
2 Hb_007120_060 0.1068541484 - - PREDICTED: splicing factor 3B subunit 3-like [Jatropha curcas]
3 Hb_000035_010 0.1109046337 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR12-like isoform X1 [Jatropha curcas]
4 Hb_000022_170 0.1115409547 - - PREDICTED: uncharacterized protein LOC105628473 [Jatropha curcas]
5 Hb_000022_150 0.1117175618 - - -
6 Hb_007123_050 0.1130514405 - - Vitellogenic carboxypeptidase, putative [Ricinus communis]
7 Hb_000950_060 0.1168174102 - - PREDICTED: CCAAT/enhancer-binding protein zeta [Jatropha curcas]
8 Hb_001223_010 0.1172235605 - - PREDICTED: FGGY carbohydrate kinase domain-containing protein isoform X2 [Jatropha curcas]
9 Hb_007546_030 0.1175168762 - - transcription cofactor, putative [Ricinus communis]
10 Hb_000175_120 0.1181770842 - - PREDICTED: pre-mRNA-processing-splicing factor 8 [Jatropha curcas]
11 Hb_114151_020 0.1186288018 - - glucan water dikinase 2 [Manihot esculenta]
12 Hb_000575_100 0.1208747211 - - PREDICTED: nephrocystin-3 isoform X2 [Jatropha curcas]
13 Hb_004218_250 0.122181475 - - PREDICTED: beta-galactosidase [Jatropha curcas]
14 Hb_000363_300 0.1222315581 - - PREDICTED: protein ENHANCED DOWNY MILDEW 2 isoform X1 [Jatropha curcas]
15 Hb_119600_050 0.1227160573 - - sugar transporter, putative [Ricinus communis]
16 Hb_020805_180 0.1274895088 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
17 Hb_003490_050 0.1279062126 - - PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic [Jatropha curcas]
18 Hb_000940_170 0.1296666633 - - hypothetical protein VITISV_029834 [Vitis vinifera]
19 Hb_000008_410 0.130220075 rubber biosynthesis Gene Name: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Hevea brasiliensis]
20 Hb_004048_120 0.1303383735 - - PREDICTED: nuclear pore complex protein NUP160 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_000800_110 Hb_000800_110 Hb_007120_060 Hb_007120_060 Hb_000800_110--Hb_007120_060 Hb_000035_010 Hb_000035_010 Hb_000800_110--Hb_000035_010 Hb_000022_170 Hb_000022_170 Hb_000800_110--Hb_000022_170 Hb_000022_150 Hb_000022_150 Hb_000800_110--Hb_000022_150 Hb_007123_050 Hb_007123_050 Hb_000800_110--Hb_007123_050 Hb_000950_060 Hb_000950_060 Hb_000800_110--Hb_000950_060 Hb_065408_010 Hb_065408_010 Hb_007120_060--Hb_065408_010 Hb_001726_100 Hb_001726_100 Hb_007120_060--Hb_001726_100 Hb_000925_090 Hb_000925_090 Hb_007120_060--Hb_000925_090 Hb_001133_030 Hb_001133_030 Hb_007120_060--Hb_001133_030 Hb_001085_030 Hb_001085_030 Hb_007120_060--Hb_001085_030 Hb_000003_410 Hb_000003_410 Hb_007120_060--Hb_000003_410 Hb_000049_250 Hb_000049_250 Hb_000035_010--Hb_000049_250 Hb_000175_120 Hb_000175_120 Hb_000035_010--Hb_000175_120 Hb_009486_090 Hb_009486_090 Hb_000035_010--Hb_009486_090 Hb_006031_010 Hb_006031_010 Hb_000035_010--Hb_006031_010 Hb_114151_020 Hb_114151_020 Hb_000035_010--Hb_114151_020 Hb_000035_010--Hb_000950_060 Hb_000940_150 Hb_000940_150 Hb_000022_170--Hb_000940_150 Hb_000022_170--Hb_000175_120 Hb_000631_110 Hb_000631_110 Hb_000022_170--Hb_000631_110 Hb_000022_170--Hb_000950_060 Hb_004218_250 Hb_004218_250 Hb_000022_170--Hb_004218_250 Hb_005333_050 Hb_005333_050 Hb_000022_150--Hb_005333_050 Hb_000742_170 Hb_000742_170 Hb_000022_150--Hb_000742_170 Hb_000317_350 Hb_000317_350 Hb_000022_150--Hb_000317_350 Hb_000022_150--Hb_004218_250 Hb_000022_150--Hb_000950_060 Hb_158092_080 Hb_158092_080 Hb_007123_050--Hb_158092_080 Hb_004064_050 Hb_004064_050 Hb_007123_050--Hb_004064_050 Hb_000243_130 Hb_000243_130 Hb_007123_050--Hb_000243_130 Hb_000608_230 Hb_000608_230 Hb_007123_050--Hb_000608_230 Hb_044486_040 Hb_044486_040 Hb_007123_050--Hb_044486_040 Hb_003913_110 Hb_003913_110 Hb_007123_050--Hb_003913_110 Hb_002639_080 Hb_002639_080 Hb_000950_060--Hb_002639_080 Hb_000950_060--Hb_003913_110 Hb_000950_060--Hb_114151_020 Hb_000950_060--Hb_000175_120 Hb_001341_180 Hb_001341_180 Hb_000950_060--Hb_001341_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.19184 5.87165 3.49518 4.6386 4.14149 5.38079
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.14519 1.08113 1.8286 11.4723 11.2789

CAGE analysis