Hb_000035_010

Information

Type transcription factor
Description TF Family: ARR-B
Location Contig35: 16327-22162
Sequence    

Annotation

kegg
ID rcu:RCOM_0922020
description two-component system sensor histidine kinase/response regulator, putative
nr
ID XP_012076456.1
description PREDICTED: two-component response regulator ARR12-like isoform X1 [Jatropha curcas]
swissprot
ID P62598
description Two-component response regulator ARR12 OS=Arabidopsis thaliana GN=ARR12 PE=2 SV=2
trembl
ID A0A067KNZ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07105 PE=4 SV=1
Gene Ontology
ID GO:0003677
description two-component response regulator arr12-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36384: 20356-20996 , PASA_asmbl_36385: 21332-21747 , PASA_asmbl_36386: 18818-21880 , PASA_asmbl_36387: 22030-22143
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000035_010 0.0 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR12-like isoform X1 [Jatropha curcas]
2 Hb_000049_250 0.0765037483 - - PREDICTED: uncharacterized protein LOC105644455 isoform X1 [Jatropha curcas]
3 Hb_000175_120 0.0788141831 - - PREDICTED: pre-mRNA-processing-splicing factor 8 [Jatropha curcas]
4 Hb_009486_090 0.0807056604 - - RNA binding protein, putative [Ricinus communis]
5 Hb_006031_010 0.0839554861 - - PREDICTED: transcription initiation factor TFIID subunit 15b isoform X3 [Jatropha curcas]
6 Hb_114151_020 0.0851648499 - - glucan water dikinase 2 [Manihot esculenta]
7 Hb_000950_060 0.0859312261 - - PREDICTED: CCAAT/enhancer-binding protein zeta [Jatropha curcas]
8 Hb_002357_070 0.0875511847 transcription factor TF Family: PHD PREDICTED: protein strawberry notch homolog 1 [Jatropha curcas]
9 Hb_001662_180 0.0879527861 - - PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X5 [Citrus sinensis]
10 Hb_004223_160 0.0884459946 - - PREDICTED: 5'-3' exoribonuclease 3 isoform X2 [Jatropha curcas]
11 Hb_001322_180 0.090647695 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 26 [Jatropha curcas]
12 Hb_001031_090 0.0914395865 - - PREDICTED: translational activator GCN1 [Jatropha curcas]
13 Hb_006829_100 0.0914696233 - - conserved hypothetical protein [Ricinus communis]
14 Hb_007245_020 0.0933387707 - - PREDICTED: pre-mRNA-processing factor 17-like isoform X1 [Populus euphratica]
15 Hb_000220_120 0.0947460153 - - PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Jatropha curcas]
16 Hb_001124_050 0.0950237111 transcription factor TF Family: SNF2 PREDICTED: chromatin structure-remodeling complex protein SYD-like [Jatropha curcas]
17 Hb_001953_120 0.0954871435 - - PREDICTED: uncharacterized protein LOC105648761 isoform X1 [Jatropha curcas]
18 Hb_000196_060 0.0958617715 - - PREDICTED: protein NRT1/ PTR FAMILY 5.10-like [Jatropha curcas]
19 Hb_001381_050 0.0960752038 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like [Jatropha curcas]
20 Hb_007123_050 0.0964551508 - - Vitellogenic carboxypeptidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000035_010 Hb_000035_010 Hb_000049_250 Hb_000049_250 Hb_000035_010--Hb_000049_250 Hb_000175_120 Hb_000175_120 Hb_000035_010--Hb_000175_120 Hb_009486_090 Hb_009486_090 Hb_000035_010--Hb_009486_090 Hb_006031_010 Hb_006031_010 Hb_000035_010--Hb_006031_010 Hb_114151_020 Hb_114151_020 Hb_000035_010--Hb_114151_020 Hb_000950_060 Hb_000950_060 Hb_000035_010--Hb_000950_060 Hb_011925_020 Hb_011925_020 Hb_000049_250--Hb_011925_020 Hb_000321_090 Hb_000321_090 Hb_000049_250--Hb_000321_090 Hb_000080_110 Hb_000080_110 Hb_000049_250--Hb_000080_110 Hb_033799_010 Hb_033799_010 Hb_000049_250--Hb_033799_010 Hb_005074_020 Hb_005074_020 Hb_000049_250--Hb_005074_020 Hb_000220_120 Hb_000220_120 Hb_000049_250--Hb_000220_120 Hb_000940_150 Hb_000940_150 Hb_000175_120--Hb_000940_150 Hb_000631_110 Hb_000631_110 Hb_000175_120--Hb_000631_110 Hb_001662_180 Hb_001662_180 Hb_000175_120--Hb_001662_180 Hb_185830_070 Hb_185830_070 Hb_000175_120--Hb_185830_070 Hb_014497_020 Hb_014497_020 Hb_000175_120--Hb_014497_020 Hb_009486_090--Hb_006031_010 Hb_001377_100 Hb_001377_100 Hb_009486_090--Hb_001377_100 Hb_001124_050 Hb_001124_050 Hb_009486_090--Hb_001124_050 Hb_000196_060 Hb_000196_060 Hb_009486_090--Hb_000196_060 Hb_001951_170 Hb_001951_170 Hb_009486_090--Hb_001951_170 Hb_009486_170 Hb_009486_170 Hb_009486_090--Hb_009486_170 Hb_002007_110 Hb_002007_110 Hb_006031_010--Hb_002007_110 Hb_012244_020 Hb_012244_020 Hb_006031_010--Hb_012244_020 Hb_006031_010--Hb_001377_100 Hb_006031_010--Hb_001951_170 Hb_123531_010 Hb_123531_010 Hb_006031_010--Hb_123531_010 Hb_114151_020--Hb_006031_010 Hb_000189_320 Hb_000189_320 Hb_114151_020--Hb_000189_320 Hb_114151_020--Hb_009486_090 Hb_114151_020--Hb_000196_060 Hb_004327_040 Hb_004327_040 Hb_114151_020--Hb_004327_040 Hb_002639_080 Hb_002639_080 Hb_000950_060--Hb_002639_080 Hb_003913_110 Hb_003913_110 Hb_000950_060--Hb_003913_110 Hb_000950_060--Hb_114151_020 Hb_000950_060--Hb_000175_120 Hb_001341_180 Hb_001341_180 Hb_000950_060--Hb_001341_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.4004 10.1432 5.67661 6.09493 4.43748 7.0564
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.35832 2.69519 2.60818 13.4744 9.9116

CAGE analysis