Hb_000189_320

Information

Type -
Description -
Location Contig189: 306943-313487
Sequence    

Annotation

kegg
ID rcu:RCOM_1427850
description tRNA pseudouridine synthase d, putative
nr
ID XP_012089238.1
description PREDICTED: multisubstrate pseudouridine synthase 7 isoform X2 [Jatropha curcas]
swissprot
ID Q08647
description Multisubstrate pseudouridine synthase 7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PUS7 PE=1 SV=1
trembl
ID B9RER1
description tRNA pseudouridine synthase d, putative OS=Ricinus communis GN=RCOM_1427850 PE=4 SV=1
Gene Ontology
ID GO:0003723
description multisubstrate pseudouridine synthase 7 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18674: 307529-309897 , PASA_asmbl_18676: 310353-312427 , PASA_asmbl_18677: 312606-313363
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000189_320 0.0 - - PREDICTED: multisubstrate pseudouridine synthase 7 isoform X2 [Jatropha curcas]
2 Hb_004327_040 0.0682626788 - - PREDICTED: tetratricopeptide repeat protein 27 homolog [Jatropha curcas]
3 Hb_003117_030 0.0780084426 - - PREDICTED: protein RCC2 homolog [Jatropha curcas]
4 Hb_003734_010 0.0788001018 - - PREDICTED: double-strand break repair protein MRE11 [Jatropha curcas]
5 Hb_008387_020 0.0834209385 - - PREDICTED: FHA domain-containing protein DDL isoform X1 [Jatropha curcas]
6 Hb_000011_270 0.084310904 - - PREDICTED: pumilio homolog 23 [Jatropha curcas]
7 Hb_000568_050 0.0846892096 - - PREDICTED: endoplasmic reticulum metallopeptidase 1 isoform X2 [Jatropha curcas]
8 Hb_114151_020 0.0851719044 - - glucan water dikinase 2 [Manihot esculenta]
9 Hb_000749_090 0.0869927679 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_001925_060 0.0899354434 - - PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog [Jatropha curcas]
11 Hb_002205_030 0.0932593462 - - PREDICTED: alpha-galactosidase 3 [Jatropha curcas]
12 Hb_122968_010 0.0967552167 - - hypothetical protein JCGZ_23576 [Jatropha curcas]
13 Hb_028960_020 0.0968759211 - - PREDICTED: uncharacterized protein LOC105646163 isoform X1 [Jatropha curcas]
14 Hb_001341_180 0.0982043168 - - PREDICTED: transmembrane protein 209 [Jatropha curcas]
15 Hb_021374_010 0.0987488592 transcription factor TF Family: NAC PREDICTED: NAC transcription factor NAM-A1 [Populus euphratica]
16 Hb_011174_020 0.0996402782 - - PREDICTED: uncharacterized protein LOC105632610 [Jatropha curcas]
17 Hb_004096_190 0.1001005399 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
18 Hb_000656_070 0.1011060615 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_012733_030 0.1011815807 - - hypothetical protein OsI_15243 [Oryza sativa Indica Group]
20 Hb_004048_120 0.1012745383 - - PREDICTED: nuclear pore complex protein NUP160 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_000189_320 Hb_000189_320 Hb_004327_040 Hb_004327_040 Hb_000189_320--Hb_004327_040 Hb_003117_030 Hb_003117_030 Hb_000189_320--Hb_003117_030 Hb_003734_010 Hb_003734_010 Hb_000189_320--Hb_003734_010 Hb_008387_020 Hb_008387_020 Hb_000189_320--Hb_008387_020 Hb_000011_270 Hb_000011_270 Hb_000189_320--Hb_000011_270 Hb_000568_050 Hb_000568_050 Hb_000189_320--Hb_000568_050 Hb_004327_040--Hb_003734_010 Hb_012760_100 Hb_012760_100 Hb_004327_040--Hb_012760_100 Hb_000025_710 Hb_000025_710 Hb_004327_040--Hb_000025_710 Hb_011174_020 Hb_011174_020 Hb_004327_040--Hb_011174_020 Hb_001925_060 Hb_001925_060 Hb_004327_040--Hb_001925_060 Hb_007413_010 Hb_007413_010 Hb_003117_030--Hb_007413_010 Hb_002581_010 Hb_002581_010 Hb_003117_030--Hb_002581_010 Hb_005489_040 Hb_005489_040 Hb_003117_030--Hb_005489_040 Hb_188281_040 Hb_188281_040 Hb_003117_030--Hb_188281_040 Hb_001789_110 Hb_001789_110 Hb_003117_030--Hb_001789_110 Hb_003117_030--Hb_001925_060 Hb_003913_070 Hb_003913_070 Hb_003734_010--Hb_003913_070 Hb_001814_030 Hb_001814_030 Hb_003734_010--Hb_001814_030 Hb_009976_020 Hb_009976_020 Hb_003734_010--Hb_009976_020 Hb_003517_040 Hb_003517_040 Hb_003734_010--Hb_003517_040 Hb_003734_010--Hb_012760_100 Hb_007426_110 Hb_007426_110 Hb_008387_020--Hb_007426_110 Hb_000749_090 Hb_000749_090 Hb_008387_020--Hb_000749_090 Hb_008387_020--Hb_003517_040 Hb_028960_020 Hb_028960_020 Hb_008387_020--Hb_028960_020 Hb_008387_020--Hb_188281_040 Hb_008387_020--Hb_000568_050 Hb_003093_040 Hb_003093_040 Hb_000011_270--Hb_003093_040 Hb_001221_180 Hb_001221_180 Hb_000011_270--Hb_001221_180 Hb_000011_270--Hb_000568_050 Hb_000175_410 Hb_000175_410 Hb_000011_270--Hb_000175_410 Hb_002357_070 Hb_002357_070 Hb_000011_270--Hb_002357_070 Hb_000001_170 Hb_000001_170 Hb_000011_270--Hb_000001_170 Hb_000568_050--Hb_011174_020 Hb_012055_110 Hb_012055_110 Hb_000568_050--Hb_012055_110 Hb_006663_060 Hb_006663_060 Hb_000568_050--Hb_006663_060 Hb_000608_300 Hb_000608_300 Hb_000568_050--Hb_000608_300 Hb_000826_070 Hb_000826_070 Hb_000568_050--Hb_000826_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.25142 5.24524 4.81964 4.46122 3.42962 6.50153
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.05845 3.15189 2.14412 8.65653 8.52981

CAGE analysis