Hb_001662_180

Information

Type -
Description -
Location Contig1662: 165156-173567
Sequence    

Annotation

kegg
ID rcu:RCOM_0782880
description DNA-directed RNA polymerase II largest subunit, putative
nr
ID XP_006467031.1
description PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X5 [Citrus sinensis]
swissprot
ID P35084
description DNA-directed RNA polymerase II subunit rpb1 OS=Dictyostelium discoideum GN=polr2a PE=2 SV=2
trembl
ID B9SXC0
description DNA-directed RNA polymerase OS=Ricinus communis GN=RCOM_0782880 PE=3 SV=1
Gene Ontology
ID GO:0005665
description dna-directed rna polymerase ii subunit 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15346: 165072-171422 , PASA_asmbl_15348: 171447-173681
cDNA
(Sanger)
(ID:Location)		 032_K01.ab1: 165111-166799

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001662_180 0.0 - - PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X5 [Citrus sinensis]
2 Hb_001699_280 0.0634685104 - - PREDICTED: transformation/transcription domain-associated protein [Jatropha curcas]
3 Hb_001951_170 0.0689881881 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
4 Hb_000175_120 0.0735993271 - - PREDICTED: pre-mRNA-processing-splicing factor 8 [Jatropha curcas]
5 Hb_001124_050 0.074437211 transcription factor TF Family: SNF2 PREDICTED: chromatin structure-remodeling complex protein SYD-like [Jatropha curcas]
6 Hb_005832_010 0.0782380085 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
7 Hb_014497_020 0.0783142158 - - PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase [Jatropha curcas]
8 Hb_007576_210 0.0791027606 - - PREDICTED: protein furry homolog [Jatropha curcas]
9 Hb_006031_010 0.0799160226 - - PREDICTED: transcription initiation factor TFIID subunit 15b isoform X3 [Jatropha curcas]
10 Hb_004223_160 0.0802588493 - - PREDICTED: 5'-3' exoribonuclease 3 isoform X2 [Jatropha curcas]
11 Hb_000836_020 0.0815285378 transcription factor TF Family: SNF2 Chromo domain protein, putative [Ricinus communis]
12 Hb_012184_060 0.0841082545 - - PREDICTED: nuclear pore complex protein NUP1 isoform X1 [Jatropha curcas]
13 Hb_009476_090 0.0852515023 - - PREDICTED: anaphase-promoting complex subunit 1 [Jatropha curcas]
14 Hb_002095_070 0.0852547859 - - PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase [Jatropha curcas]
15 Hb_188063_010 0.0855715008 - - hypothetical protein RCOM_1469330 [Ricinus communis]
16 Hb_009486_170 0.0862563951 - - PREDICTED: eukaryotic translation initiation factor 4G [Jatropha curcas]
17 Hb_001085_030 0.0869490526 - - Tetratricopeptide repeat-like superfamily protein, putative isoform 1 [Theobroma cacao]
18 Hb_003604_050 0.0874662992 - - PREDICTED: MAP3K epsilon protein kinase 1-like isoform X2 [Jatropha curcas]
19 Hb_000035_010 0.0879527861 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR12-like isoform X1 [Jatropha curcas]
20 Hb_003216_090 0.0883540195 - - PREDICTED: nuclear pore complex protein NUP133 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001662_180 Hb_001662_180 Hb_001699_280 Hb_001699_280 Hb_001662_180--Hb_001699_280 Hb_001951_170 Hb_001951_170 Hb_001662_180--Hb_001951_170 Hb_000175_120 Hb_000175_120 Hb_001662_180--Hb_000175_120 Hb_001124_050 Hb_001124_050 Hb_001662_180--Hb_001124_050 Hb_005832_010 Hb_005832_010 Hb_001662_180--Hb_005832_010 Hb_014497_020 Hb_014497_020 Hb_001662_180--Hb_014497_020 Hb_000105_040 Hb_000105_040 Hb_001699_280--Hb_000105_040 Hb_188063_010 Hb_188063_010 Hb_001699_280--Hb_188063_010 Hb_003581_170 Hb_003581_170 Hb_001699_280--Hb_003581_170 Hb_000261_150 Hb_000261_150 Hb_001699_280--Hb_000261_150 Hb_001699_280--Hb_001951_170 Hb_003216_090 Hb_003216_090 Hb_001951_170--Hb_003216_090 Hb_001951_170--Hb_005832_010 Hb_006031_010 Hb_006031_010 Hb_001951_170--Hb_006031_010 Hb_006531_020 Hb_006531_020 Hb_001951_170--Hb_006531_020 Hb_002007_110 Hb_002007_110 Hb_001951_170--Hb_002007_110 Hb_000331_580 Hb_000331_580 Hb_001951_170--Hb_000331_580 Hb_000940_150 Hb_000940_150 Hb_000175_120--Hb_000940_150 Hb_000631_110 Hb_000631_110 Hb_000175_120--Hb_000631_110 Hb_000035_010 Hb_000035_010 Hb_000175_120--Hb_000035_010 Hb_185830_070 Hb_185830_070 Hb_000175_120--Hb_185830_070 Hb_000175_120--Hb_014497_020 Hb_009486_170 Hb_009486_170 Hb_001124_050--Hb_009486_170 Hb_009486_090 Hb_009486_090 Hb_001124_050--Hb_009486_090 Hb_002521_020 Hb_002521_020 Hb_001124_050--Hb_002521_020 Hb_001124_050--Hb_006031_010 Hb_001133_030 Hb_001133_030 Hb_001124_050--Hb_001133_030 Hb_001124_050--Hb_001951_170 Hb_001904_030 Hb_001904_030 Hb_005832_010--Hb_001904_030 Hb_004223_160 Hb_004223_160 Hb_005832_010--Hb_004223_160 Hb_009476_090 Hb_009476_090 Hb_005832_010--Hb_009476_090 Hb_005832_010--Hb_002007_110 Hb_000172_340 Hb_000172_340 Hb_005832_010--Hb_000172_340 Hb_007576_210 Hb_007576_210 Hb_014497_020--Hb_007576_210 Hb_003895_040 Hb_003895_040 Hb_014497_020--Hb_003895_040 Hb_014497_020--Hb_001124_050 Hb_003211_040 Hb_003211_040 Hb_014497_020--Hb_003211_040 Hb_014497_020--Hb_009486_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.7565 40.52 12.3378 14.6554 14.5112 21.7093
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.40715 6.63818 9.1342 31.4048 26.6537

CAGE analysis