Hb_000175_120

Information

Type -
Description -
Location Contig175: 76407-88675
Sequence    

Annotation

kegg
ID pop:POPTR_0003s02640g
description embryo defective 14 family protein
nr
ID XP_012073164.1
description PREDICTED: pre-mRNA-processing-splicing factor 8 [Jatropha curcas]
swissprot
ID Q99PV0
description Pre-mRNA-processing-splicing factor 8 OS=Mus musculus GN=Prpf8 PE=1 SV=2
trembl
ID A0A067KXR6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06126 PE=4 SV=1
Gene Ontology
ID GO:0005681
description pre-mrna-processing-splicing factor 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16675: 77270-78379 , PASA_asmbl_16676: 78380-79204 , PASA_asmbl_16677: 79205-79904 , PASA_asmbl_16678: 79905-88713
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000175_120 0.0 - - PREDICTED: pre-mRNA-processing-splicing factor 8 [Jatropha curcas]
2 Hb_000940_150 0.066953442 - - PREDICTED: uncharacterized protein LOC105643779 [Jatropha curcas]
3 Hb_000631_110 0.0712992196 - - PREDICTED: activating signal cointegrator 1 complex subunit 3 [Jatropha curcas]
4 Hb_001662_180 0.0735993271 - - PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X5 [Citrus sinensis]
5 Hb_000035_010 0.0788141831 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR12-like isoform X1 [Jatropha curcas]
6 Hb_185830_070 0.0900274788 - - PREDICTED: enhancer of mRNA-decapping protein 4-like isoform X1 [Jatropha curcas]
7 Hb_014497_020 0.0908122314 - - PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase [Jatropha curcas]
8 Hb_001322_180 0.095180641 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 26 [Jatropha curcas]
9 Hb_000022_170 0.0957160668 - - PREDICTED: uncharacterized protein LOC105628473 [Jatropha curcas]
10 Hb_002027_190 0.095918722 - - PREDICTED: autophagy-related protein 18g [Jatropha curcas]
11 Hb_006907_140 0.0978564716 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000950_060 0.0981569427 - - PREDICTED: CCAAT/enhancer-binding protein zeta [Jatropha curcas]
13 Hb_001124_050 0.1003028835 transcription factor TF Family: SNF2 PREDICTED: chromatin structure-remodeling complex protein SYD-like [Jatropha curcas]
14 Hb_007576_210 0.1024046645 - - PREDICTED: protein furry homolog [Jatropha curcas]
15 Hb_000574_530 0.1033685638 - - PREDICTED: pre-mRNA-processing-splicing factor 8 [Jatropha curcas]
16 Hb_004109_380 0.1064641541 - - PREDICTED: callose synthase 9 isoform X4 [Pyrus x bretschneideri]
17 Hb_000105_030 0.107496702 - - fkbp-rapamycin associated protein, putative [Ricinus communis]
18 Hb_009486_090 0.1079749721 - - RNA binding protein, putative [Ricinus communis]
19 Hb_000083_270 0.1079881797 - - PREDICTED: putative uncharacterized protein At4g01020, chloroplastic [Jatropha curcas]
20 Hb_006829_100 0.1099637316 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000175_120 Hb_000175_120 Hb_000940_150 Hb_000940_150 Hb_000175_120--Hb_000940_150 Hb_000631_110 Hb_000631_110 Hb_000175_120--Hb_000631_110 Hb_001662_180 Hb_001662_180 Hb_000175_120--Hb_001662_180 Hb_000035_010 Hb_000035_010 Hb_000175_120--Hb_000035_010 Hb_185830_070 Hb_185830_070 Hb_000175_120--Hb_185830_070 Hb_014497_020 Hb_014497_020 Hb_000175_120--Hb_014497_020 Hb_000940_150--Hb_000631_110 Hb_000940_150--Hb_185830_070 Hb_000022_170 Hb_000022_170 Hb_000940_150--Hb_000022_170 Hb_004218_250 Hb_004218_250 Hb_000940_150--Hb_004218_250 Hb_000574_530 Hb_000574_530 Hb_000940_150--Hb_000574_530 Hb_000083_270 Hb_000083_270 Hb_000631_110--Hb_000083_270 Hb_000105_030 Hb_000105_030 Hb_000631_110--Hb_000105_030 Hb_002005_080 Hb_002005_080 Hb_000631_110--Hb_002005_080 Hb_000631_110--Hb_185830_070 Hb_001699_280 Hb_001699_280 Hb_001662_180--Hb_001699_280 Hb_001951_170 Hb_001951_170 Hb_001662_180--Hb_001951_170 Hb_001124_050 Hb_001124_050 Hb_001662_180--Hb_001124_050 Hb_005832_010 Hb_005832_010 Hb_001662_180--Hb_005832_010 Hb_001662_180--Hb_014497_020 Hb_000049_250 Hb_000049_250 Hb_000035_010--Hb_000049_250 Hb_009486_090 Hb_009486_090 Hb_000035_010--Hb_009486_090 Hb_006031_010 Hb_006031_010 Hb_000035_010--Hb_006031_010 Hb_114151_020 Hb_114151_020 Hb_000035_010--Hb_114151_020 Hb_000950_060 Hb_000950_060 Hb_000035_010--Hb_000950_060 Hb_002027_190 Hb_002027_190 Hb_185830_070--Hb_002027_190 Hb_185830_070--Hb_000574_530 Hb_185830_070--Hb_004218_250 Hb_007576_210 Hb_007576_210 Hb_014497_020--Hb_007576_210 Hb_003895_040 Hb_003895_040 Hb_014497_020--Hb_003895_040 Hb_014497_020--Hb_001124_050 Hb_003211_040 Hb_003211_040 Hb_014497_020--Hb_003211_040 Hb_009486_170 Hb_009486_170 Hb_014497_020--Hb_009486_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.87812 31.0083 9.166 14.5867 12.6367 19.3437
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.88483 4.31836 7.8131 37.9464 23.4943

CAGE analysis