Hb_002005_080

Information

Type -
Description -
Location Contig2005: 71268-79635
Sequence    

Annotation

kegg
ID vvi:100243465
description uncharacterized LOC100243465
nr
ID XP_012091896.1
description PREDICTED: uncharacterized protein LOC105649750 isoform X1 [Jatropha curcas]
swissprot
ID Q4KLU2
description Pre-mRNA-processing factor 39 OS=Xenopus laevis GN=prpf39 PE=2 SV=1
trembl
ID A0A067JMJ5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21671 PE=4 SV=1
Gene Ontology
ID GO:0005622
description tetratricopeptide repeat-like superfamily prp39- -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20310: 77048-93978 , PASA_asmbl_20311: 75115-80146 , PASA_asmbl_20312: 74014-76576
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002005_080 0.0 - - PREDICTED: uncharacterized protein LOC105649750 isoform X1 [Jatropha curcas]
2 Hb_000684_290 0.0753861561 - - ubiquitin protein ligase E3a, putative [Ricinus communis]
3 Hb_001006_340 0.0805008998 - - PREDICTED: sodium/hydrogen exchanger 7-like [Malus domestica]
4 Hb_041327_010 0.0860641494 - - PREDICTED: la-related protein 1A isoform X1 [Jatropha curcas]
5 Hb_002639_080 0.0876958654 - - PREDICTED: large proline-rich protein BAG6 isoform X1 [Jatropha curcas]
6 Hb_000083_270 0.087914684 - - PREDICTED: putative uncharacterized protein At4g01020, chloroplastic [Jatropha curcas]
7 Hb_003498_130 0.0888189642 - - PREDICTED: protein ROOT HAIR DEFECTIVE 3 homolog 2-like [Citrus sinensis]
8 Hb_000631_110 0.0904654314 - - PREDICTED: activating signal cointegrator 1 complex subunit 3 [Jatropha curcas]
9 Hb_003060_060 0.092155626 - - PREDICTED: protein transport protein SEC31 homolog B [Jatropha curcas]
10 Hb_007632_010 0.094412088 - - PREDICTED: E3 ubiquitin-protein ligase UPL1 isoform X1 [Jatropha curcas]
11 Hb_000340_490 0.0962991261 - - PREDICTED: ankyrin-1-like [Jatropha curcas]
12 Hb_000412_010 0.0986196283 - - hect ubiquitin-protein ligase, putative [Ricinus communis]
13 Hb_000940_150 0.0998981991 - - PREDICTED: uncharacterized protein LOC105643779 [Jatropha curcas]
14 Hb_000950_060 0.1003353358 - - PREDICTED: CCAAT/enhancer-binding protein zeta [Jatropha curcas]
15 Hb_003913_110 0.1012852623 - - PREDICTED: uncharacterized protein LOC105640319 [Jatropha curcas]
16 Hb_001575_010 0.1036300001 - - PREDICTED: pumilio homolog 6, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_000608_230 0.1049155852 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]
18 Hb_000106_120 0.1052091853 - - hypothetical protein glysoja_007050 [Glycine soja]
19 Hb_010021_010 0.1059598834 - - unnamed protein product [Coffea canephora]
20 Hb_000069_410 0.106211359 - - PREDICTED: protein SDE2 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_002005_080 Hb_002005_080 Hb_000684_290 Hb_000684_290 Hb_002005_080--Hb_000684_290 Hb_001006_340 Hb_001006_340 Hb_002005_080--Hb_001006_340 Hb_041327_010 Hb_041327_010 Hb_002005_080--Hb_041327_010 Hb_002639_080 Hb_002639_080 Hb_002005_080--Hb_002639_080 Hb_000083_270 Hb_000083_270 Hb_002005_080--Hb_000083_270 Hb_003498_130 Hb_003498_130 Hb_002005_080--Hb_003498_130 Hb_017358_040 Hb_017358_040 Hb_000684_290--Hb_017358_040 Hb_000340_490 Hb_000340_490 Hb_000684_290--Hb_000340_490 Hb_000106_120 Hb_000106_120 Hb_000684_290--Hb_000106_120 Hb_002477_090 Hb_002477_090 Hb_000684_290--Hb_002477_090 Hb_001761_130 Hb_001761_130 Hb_000684_290--Hb_001761_130 Hb_004411_030 Hb_004411_030 Hb_001006_340--Hb_004411_030 Hb_003060_060 Hb_003060_060 Hb_001006_340--Hb_003060_060 Hb_001431_120 Hb_001431_120 Hb_001006_340--Hb_001431_120 Hb_001754_040 Hb_001754_040 Hb_001006_340--Hb_001754_040 Hb_001006_340--Hb_041327_010 Hb_041327_010--Hb_002639_080 Hb_012286_040 Hb_012286_040 Hb_041327_010--Hb_012286_040 Hb_000261_480 Hb_000261_480 Hb_041327_010--Hb_000261_480 Hb_000230_260 Hb_000230_260 Hb_041327_010--Hb_000230_260 Hb_000069_120 Hb_000069_120 Hb_041327_010--Hb_000069_120 Hb_000537_050 Hb_000537_050 Hb_041327_010--Hb_000537_050 Hb_001188_020 Hb_001188_020 Hb_002639_080--Hb_001188_020 Hb_071130_010 Hb_071130_010 Hb_002639_080--Hb_071130_010 Hb_004143_160 Hb_004143_160 Hb_002639_080--Hb_004143_160 Hb_002639_080--Hb_000069_120 Hb_007632_010 Hb_007632_010 Hb_002639_080--Hb_007632_010 Hb_001699_280 Hb_001699_280 Hb_000083_270--Hb_001699_280 Hb_000631_110 Hb_000631_110 Hb_000083_270--Hb_000631_110 Hb_000083_270--Hb_000340_490 Hb_004705_020 Hb_004705_020 Hb_000083_270--Hb_004705_020 Hb_001628_070 Hb_001628_070 Hb_000083_270--Hb_001628_070 Hb_006909_010 Hb_006909_010 Hb_003498_130--Hb_006909_010 Hb_003498_130--Hb_000106_120 Hb_003498_130--Hb_000684_290 Hb_011928_020 Hb_011928_020 Hb_003498_130--Hb_011928_020 Hb_000950_060 Hb_000950_060 Hb_003498_130--Hb_000950_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.3563 3.16397 1.10398 1.52919 2.43378 2.30556
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.03804 0.746675 1.93216 4.71929 2.29851

CAGE analysis