Hb_004411_030

Information

Type -
Description -
Location Contig4411: 35272-39658
Sequence    

Annotation

kegg
ID pop:POPTR_0017s00310g
description hypothetical protein
nr
ID XP_006372296.1
description hypothetical protein POPTR_0017s00310g [Populus trichocarpa]
swissprot
ID Q9SLN8
description 2-alkenal reductase (NADP(+)-dependent) OS=Nicotiana tabacum GN=DBR PE=1 SV=1
trembl
ID U5FG97
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s00310g PE=4 SV=1
Gene Ontology
ID GO:0008270
description 2-alkenal reductase (nadp(+)-dependent)-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42677: 35379-39632
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004411_030 0.0 - - hypothetical protein POPTR_0017s00310g [Populus trichocarpa]
2 Hb_041327_010 0.0750005963 - - PREDICTED: la-related protein 1A isoform X1 [Jatropha curcas]
3 Hb_000037_220 0.0849017325 - - PREDICTED: vacuolar protein-sorting-associated protein 11 homolog [Jatropha curcas]
4 Hb_001754_040 0.0868970287 transcription factor TF Family: TRAF PREDICTED: uncharacterized protein LOC105643434 [Jatropha curcas]
5 Hb_140049_080 0.087468959 - - PREDICTED: probable RNA helicase SDE3 [Jatropha curcas]
6 Hb_000003_100 0.0875384146 transcription factor TF Family: SNF2 PREDICTED: transcription termination factor 2 isoform X5 [Jatropha curcas]
7 Hb_019840_030 0.0878953234 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
8 Hb_000130_160 0.0879054676 - - PREDICTED: protein DJ-1 homolog B-like [Jatropha curcas]
9 Hb_001006_340 0.0897246472 - - PREDICTED: sodium/hydrogen exchanger 7-like [Malus domestica]
10 Hb_000608_230 0.0907043647 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]
11 Hb_003216_090 0.0933440269 - - PREDICTED: nuclear pore complex protein NUP133 isoform X1 [Jatropha curcas]
12 Hb_002889_020 0.0933734087 - - PREDICTED: mitogen-activated protein kinase kinase 3 [Jatropha curcas]
13 Hb_000261_480 0.093520424 - - 26S proteasome regulatory subunit family protein [Populus trichocarpa]
14 Hb_006829_100 0.0938761554 - - conserved hypothetical protein [Ricinus communis]
15 Hb_021510_010 0.0958476878 - - PREDICTED: deoxynucleoside triphosphate triphosphohydrolase SAMHD1 homolog [Jatropha curcas]
16 Hb_178968_050 0.0961374421 - - PREDICTED: probable serine incorporator [Jatropha curcas]
17 Hb_000256_020 0.0988658397 transcription factor TF Family: PHD PREDICTED: CHD3-type chromatin-remodeling factor PICKLE isoform X1 [Jatropha curcas]
18 Hb_007747_170 0.1015369714 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
19 Hb_012286_040 0.1018981218 - - PREDICTED: pre-mRNA-splicing factor RSE1 [Jatropha curcas]
20 Hb_000789_250 0.1031924068 - - PREDICTED: uncharacterized protein LOC105637809 [Jatropha curcas]

Gene co-expression network

sample Hb_004411_030 Hb_004411_030 Hb_041327_010 Hb_041327_010 Hb_004411_030--Hb_041327_010 Hb_000037_220 Hb_000037_220 Hb_004411_030--Hb_000037_220 Hb_001754_040 Hb_001754_040 Hb_004411_030--Hb_001754_040 Hb_140049_080 Hb_140049_080 Hb_004411_030--Hb_140049_080 Hb_000003_100 Hb_000003_100 Hb_004411_030--Hb_000003_100 Hb_019840_030 Hb_019840_030 Hb_004411_030--Hb_019840_030 Hb_002639_080 Hb_002639_080 Hb_041327_010--Hb_002639_080 Hb_012286_040 Hb_012286_040 Hb_041327_010--Hb_012286_040 Hb_000261_480 Hb_000261_480 Hb_041327_010--Hb_000261_480 Hb_000230_260 Hb_000230_260 Hb_041327_010--Hb_000230_260 Hb_000069_120 Hb_000069_120 Hb_041327_010--Hb_000069_120 Hb_000537_050 Hb_000537_050 Hb_041327_010--Hb_000537_050 Hb_005563_060 Hb_005563_060 Hb_000037_220--Hb_005563_060 Hb_000556_220 Hb_000556_220 Hb_000037_220--Hb_000556_220 Hb_000037_220--Hb_000003_100 Hb_000037_220--Hb_140049_080 Hb_000094_310 Hb_000094_310 Hb_000037_220--Hb_000094_310 Hb_000037_220--Hb_041327_010 Hb_000579_230 Hb_000579_230 Hb_001754_040--Hb_000579_230 Hb_000395_070 Hb_000395_070 Hb_001754_040--Hb_000395_070 Hb_004676_010 Hb_004676_010 Hb_001754_040--Hb_004676_010 Hb_011618_090 Hb_011618_090 Hb_001754_040--Hb_011618_090 Hb_000789_250 Hb_000789_250 Hb_001754_040--Hb_000789_250 Hb_001754_040--Hb_140049_080 Hb_061878_010 Hb_061878_010 Hb_140049_080--Hb_061878_010 Hb_006355_090 Hb_006355_090 Hb_140049_080--Hb_006355_090 Hb_004109_370 Hb_004109_370 Hb_140049_080--Hb_004109_370 Hb_009615_170 Hb_009615_170 Hb_140049_080--Hb_009615_170 Hb_001318_020 Hb_001318_020 Hb_140049_080--Hb_001318_020 Hb_003216_090 Hb_003216_090 Hb_000003_100--Hb_003216_090 Hb_000331_580 Hb_000331_580 Hb_000003_100--Hb_000331_580 Hb_002890_130 Hb_002890_130 Hb_000003_100--Hb_002890_130 Hb_000003_100--Hb_005563_060 Hb_000003_100--Hb_012286_040 Hb_000008_240 Hb_000008_240 Hb_000003_100--Hb_000008_240 Hb_060980_010 Hb_060980_010 Hb_019840_030--Hb_060980_010 Hb_002596_060 Hb_002596_060 Hb_019840_030--Hb_002596_060 Hb_007747_170 Hb_007747_170 Hb_019840_030--Hb_007747_170 Hb_001221_180 Hb_001221_180 Hb_019840_030--Hb_001221_180 Hb_001085_290 Hb_001085_290 Hb_019840_030--Hb_001085_290 Hb_027506_010 Hb_027506_010 Hb_019840_030--Hb_027506_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.0263 33.9255 27.4572 26.8923 24.3262 25.313
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.6069 7.88354 27.4053 49.6123 24.584

CAGE analysis