Hb_011928_020

Information

Type -
Description -
Location Contig11928: 11617-15174
Sequence    

Annotation

kegg
ID rcu:RCOM_0547700
description something about silencing protein sas10, putative
nr
ID XP_002530574.1
description something about silencing protein sas10, putative [Ricinus communis]
swissprot
ID Q9NQZ2
description Something about silencing protein 10 OS=Homo sapiens GN=UTP3 PE=1 SV=1
trembl
ID B9SX55
description Something about silencing protein sas10, putative OS=Ricinus communis GN=RCOM_0547700 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011928_020 0.0 - - something about silencing protein sas10, putative [Ricinus communis]
2 Hb_001529_040 0.092870186 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
3 Hb_000470_080 0.1002821185 - - Caldesmon, putative [Ricinus communis]
4 Hb_000398_120 0.1045468305 - - PREDICTED: squamous cell carcinoma antigen recognized by T-cells 3-like isoform X4 [Gossypium raimondii]
5 Hb_003498_130 0.108888074 - - PREDICTED: protein ROOT HAIR DEFECTIVE 3 homolog 2-like [Citrus sinensis]
6 Hb_002631_170 0.1090811463 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 36 [Jatropha curcas]
7 Hb_000071_180 0.1096562671 - - PREDICTED: putative DEAD-box ATP-dependent RNA helicase 29 isoform X1 [Jatropha curcas]
8 Hb_188126_010 0.1111161285 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25-like isoform X3 [Jatropha curcas]
9 Hb_001473_180 0.1119440312 - - glutathione reductase [Hevea brasiliensis]
10 Hb_001343_040 0.1127767296 - - PREDICTED: uncharacterized protein LOC105638555 [Jatropha curcas]
11 Hb_000106_120 0.1130567256 - - hypothetical protein glysoja_007050 [Glycine soja]
12 Hb_011310_160 0.1133264936 - - PREDICTED: RNA-dependent RNA polymerase 6-like [Jatropha curcas]
13 Hb_000592_030 0.1136640078 - - PREDICTED: uncharacterized protein LOC100853969 isoform X1 [Vitis vinifera]
14 Hb_000005_190 0.114397785 - - hypothetical protein JCGZ_05438 [Jatropha curcas]
15 Hb_017358_040 0.1145182284 - - PREDICTED: RNA-dependent RNA polymerase 6-like [Jatropha curcas]
16 Hb_001761_130 0.1151382806 - - PREDICTED: uncharacterized protein LOC105646118 isoform X1 [Jatropha curcas]
17 Hb_007805_010 0.1158164735 - - PREDICTED: ribosome biogenesis protein BMS1 homolog [Jatropha curcas]
18 Hb_004954_070 0.1163843406 - - PREDICTED: uncharacterized protein LOC105645187 [Jatropha curcas]
19 Hb_003060_060 0.1166102318 - - PREDICTED: protein transport protein SEC31 homolog B [Jatropha curcas]
20 Hb_002815_030 0.1171155862 - - hypothetical protein CISIN_1g0095162mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_011928_020 Hb_011928_020 Hb_001529_040 Hb_001529_040 Hb_011928_020--Hb_001529_040 Hb_000470_080 Hb_000470_080 Hb_011928_020--Hb_000470_080 Hb_000398_120 Hb_000398_120 Hb_011928_020--Hb_000398_120 Hb_003498_130 Hb_003498_130 Hb_011928_020--Hb_003498_130 Hb_002631_170 Hb_002631_170 Hb_011928_020--Hb_002631_170 Hb_000071_180 Hb_000071_180 Hb_011928_020--Hb_000071_180 Hb_003060_060 Hb_003060_060 Hb_001529_040--Hb_003060_060 Hb_000395_070 Hb_000395_070 Hb_001529_040--Hb_000395_070 Hb_001913_060 Hb_001913_060 Hb_001529_040--Hb_001913_060 Hb_000494_070 Hb_000494_070 Hb_001529_040--Hb_000494_070 Hb_002740_110 Hb_002740_110 Hb_001529_040--Hb_002740_110 Hb_000740_100 Hb_000740_100 Hb_001529_040--Hb_000740_100 Hb_007805_010 Hb_007805_010 Hb_000470_080--Hb_007805_010 Hb_005679_050 Hb_005679_050 Hb_000470_080--Hb_005679_050 Hb_002974_060 Hb_002974_060 Hb_000470_080--Hb_002974_060 Hb_011310_160 Hb_011310_160 Hb_000470_080--Hb_011310_160 Hb_003294_090 Hb_003294_090 Hb_000470_080--Hb_003294_090 Hb_000398_120--Hb_011310_160 Hb_000398_120--Hb_003294_090 Hb_000398_120--Hb_001529_040 Hb_003253_040 Hb_003253_040 Hb_000398_120--Hb_003253_040 Hb_006660_010 Hb_006660_010 Hb_000398_120--Hb_006660_010 Hb_143629_110 Hb_143629_110 Hb_000398_120--Hb_143629_110 Hb_002005_080 Hb_002005_080 Hb_003498_130--Hb_002005_080 Hb_006909_010 Hb_006909_010 Hb_003498_130--Hb_006909_010 Hb_000106_120 Hb_000106_120 Hb_003498_130--Hb_000106_120 Hb_000684_290 Hb_000684_290 Hb_003498_130--Hb_000684_290 Hb_000950_060 Hb_000950_060 Hb_003498_130--Hb_000950_060 Hb_002311_290 Hb_002311_290 Hb_002631_170--Hb_002311_290 Hb_009486_180 Hb_009486_180 Hb_002631_170--Hb_009486_180 Hb_001062_010 Hb_001062_010 Hb_002631_170--Hb_001062_010 Hb_001935_110 Hb_001935_110 Hb_002631_170--Hb_001935_110 Hb_000603_030 Hb_000603_030 Hb_002631_170--Hb_000603_030 Hb_002092_130 Hb_002092_130 Hb_002631_170--Hb_002092_130 Hb_011716_020 Hb_011716_020 Hb_000071_180--Hb_011716_020 Hb_002600_140 Hb_002600_140 Hb_000071_180--Hb_002600_140 Hb_002028_170 Hb_002028_170 Hb_000071_180--Hb_002028_170 Hb_006114_030 Hb_006114_030 Hb_000071_180--Hb_006114_030 Hb_000271_090 Hb_000271_090 Hb_000071_180--Hb_000271_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.55713 1.62715 1.25453 1.13314 2.44918 3.56998
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.71657 0.996296 1.75282 4.53706 2.04534

CAGE analysis