Hb_011310_160

Information

Type -
Description -
Location Contig11310: 84395-93020
Sequence    

Annotation

kegg
ID rcu:RCOM_0924060
description RNA-dependent RNA polymerase, putative
nr
ID XP_012071453.1
description PREDICTED: RNA-dependent RNA polymerase 6-like [Jatropha curcas]
swissprot
ID Q9SG02
description RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana GN=RDR6 PE=1 SV=1
trembl
ID A0A067L2C2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03988 PE=4 SV=1
Gene Ontology
ID GO:0000166
description rna-dependent rna polymerase 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03915: 86591-86829 , PASA_asmbl_03917: 88674-93017
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011310_160 0.0 - - PREDICTED: RNA-dependent RNA polymerase 6-like [Jatropha curcas]
2 Hb_000398_120 0.0668131417 - - PREDICTED: squamous cell carcinoma antigen recognized by T-cells 3-like isoform X4 [Gossypium raimondii]
3 Hb_006660_010 0.0757292678 - - PREDICTED: exocyst complex component EXO84C isoform X1 [Jatropha curcas]
4 Hb_003988_010 0.0882818039 - - PREDICTED: vacuolar-sorting receptor 3 [Jatropha curcas]
5 Hb_025477_040 0.0886922279 - - PREDICTED: post-GPI attachment to proteins factor 3 [Jatropha curcas]
6 Hb_010174_040 0.0916690141 - - PREDICTED: T-complex protein 1 subunit epsilon [Jatropha curcas]
7 Hb_002974_060 0.0920808848 - - PREDICTED: transcription initiation factor TFIID subunit 15b isoform X2 [Jatropha curcas]
8 Hb_000785_040 0.0936107061 - - PREDICTED: uncharacterized protein LOC105628919 [Jatropha curcas]
9 Hb_000159_100 0.0951590713 - - PREDICTED: uncharacterized protein At4g19900 isoform X2 [Jatropha curcas]
10 Hb_000470_080 0.0952542662 - - Caldesmon, putative [Ricinus communis]
11 Hb_001529_040 0.0952827392 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
12 Hb_003060_060 0.0956392304 - - PREDICTED: protein transport protein SEC31 homolog B [Jatropha curcas]
13 Hb_188126_010 0.0958645016 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25-like isoform X3 [Jatropha curcas]
14 Hb_123903_010 0.0971034209 transcription factor TF Family: IWS1 conserved hypothetical protein [Ricinus communis]
15 Hb_000284_120 0.0976931927 - - PREDICTED: uncharacterized protein LOC105629656 [Jatropha curcas]
16 Hb_000264_350 0.0986409127 - - PREDICTED: uncharacterized protein LOC105649541 [Jatropha curcas]
17 Hb_002811_060 0.1002160062 - - PREDICTED: protein transport protein Sec24-like At4g32640 [Jatropha curcas]
18 Hb_000395_070 0.1013487482 - - PREDICTED: serine/threonine-protein kinase BLUS1 isoform X2 [Jatropha curcas]
19 Hb_000116_500 0.1016455252 - - PREDICTED: trafficking protein particle complex subunit 11 [Jatropha curcas]
20 Hb_003294_090 0.1017493763 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_011310_160 Hb_011310_160 Hb_000398_120 Hb_000398_120 Hb_011310_160--Hb_000398_120 Hb_006660_010 Hb_006660_010 Hb_011310_160--Hb_006660_010 Hb_003988_010 Hb_003988_010 Hb_011310_160--Hb_003988_010 Hb_025477_040 Hb_025477_040 Hb_011310_160--Hb_025477_040 Hb_010174_040 Hb_010174_040 Hb_011310_160--Hb_010174_040 Hb_002974_060 Hb_002974_060 Hb_011310_160--Hb_002974_060 Hb_003294_090 Hb_003294_090 Hb_000398_120--Hb_003294_090 Hb_001529_040 Hb_001529_040 Hb_000398_120--Hb_001529_040 Hb_003253_040 Hb_003253_040 Hb_000398_120--Hb_003253_040 Hb_000398_120--Hb_006660_010 Hb_143629_110 Hb_143629_110 Hb_000398_120--Hb_143629_110 Hb_007803_050 Hb_007803_050 Hb_006660_010--Hb_007803_050 Hb_002811_060 Hb_002811_060 Hb_006660_010--Hb_002811_060 Hb_000212_310 Hb_000212_310 Hb_006660_010--Hb_000212_310 Hb_007062_020 Hb_007062_020 Hb_006660_010--Hb_007062_020 Hb_000592_030 Hb_000592_030 Hb_006660_010--Hb_000592_030 Hb_010417_050 Hb_010417_050 Hb_003988_010--Hb_010417_050 Hb_003988_010--Hb_002811_060 Hb_000116_500 Hb_000116_500 Hb_003988_010--Hb_000116_500 Hb_003605_110 Hb_003605_110 Hb_003988_010--Hb_003605_110 Hb_004228_010 Hb_004228_010 Hb_003988_010--Hb_004228_010 Hb_002053_080 Hb_002053_080 Hb_003988_010--Hb_002053_080 Hb_032202_200 Hb_032202_200 Hb_025477_040--Hb_032202_200 Hb_123903_010 Hb_123903_010 Hb_025477_040--Hb_123903_010 Hb_002815_030 Hb_002815_030 Hb_025477_040--Hb_002815_030 Hb_012053_080 Hb_012053_080 Hb_025477_040--Hb_012053_080 Hb_002329_040 Hb_002329_040 Hb_025477_040--Hb_002329_040 Hb_021297_050 Hb_021297_050 Hb_025477_040--Hb_021297_050 Hb_003645_060 Hb_003645_060 Hb_010174_040--Hb_003645_060 Hb_010174_040--Hb_000592_030 Hb_000617_180 Hb_000617_180 Hb_010174_040--Hb_000617_180 Hb_002909_140 Hb_002909_140 Hb_010174_040--Hb_002909_140 Hb_001655_030 Hb_001655_030 Hb_010174_040--Hb_001655_030 Hb_010174_040--Hb_143629_110 Hb_011716_020 Hb_011716_020 Hb_002974_060--Hb_011716_020 Hb_002551_070 Hb_002551_070 Hb_002974_060--Hb_002551_070 Hb_002600_140 Hb_002600_140 Hb_002974_060--Hb_002600_140 Hb_001496_070 Hb_001496_070 Hb_002974_060--Hb_001496_070 Hb_000446_120 Hb_000446_120 Hb_002974_060--Hb_000446_120 Hb_116929_010 Hb_116929_010 Hb_002974_060--Hb_116929_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.3016 13.3966 11.0074 17.319 30.5261 31.8962
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.72039 8.44756 20.9091 31.1736 21.9024

CAGE analysis